RNA id: TCONS_00000564


Basic Information

Item Value
RNA id TCONS_00000564
length 1580
RNA type mRNA
GC content 0.41
exon number 13
gene id XLOC_000332
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 27977297 ~ 28020042 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAAATCAGAAGAAGAAGAGCAAGGAAGTAGTGTGGGATTGACAGGCCCAATTATTTACTTCCTTTAACGCCGCTGTTCCCTCTCGAACTTTCTGCGGTTTCAGACGAAGTACGAAGTACGAAGAGTGGACCCATGGCAACTTGCGGGCGTTACTCTGACAGTTTCATAGATGAGGATCCTAGGAGGGCCCTTGAGGAACTAAATGAAGCATTGGGAGAGAAAGCAGATAATGCTGAATGGCTCTGCCAGCGAGCTTATGCCTATATTCTGTTGAAAGAGTACACCAaAGCAATTGATGATGCCAAGAAAGCCCAAGACCTGCAGCCAGGACTAGCACTTCCCTTTCTAAGAATAGGAATTGCAGAGTATCACCTACATAACTTTGTCGCTGCTCATCAGGCCCTCACAGCAGGAAGAGACCTTGACAGTTCTGTTGAAGAATTTCAAACATGGATGCAGCACTGTGAAACTGAAATGGCGACACACATTCCAAACAAAACTTCAGATTTGCAAACTACAACCCATGTCAAACATGATTGGTACCAGACAGAGTCTCAAGTTGCAGTTACCATCATGGTAAAAAATGCCAAGAAGGAGGGTGTGATTGTCAGCTTTGGCGAAAGGGAGTTGACCGCTGTGGTAAAGCTTCCATCAGGAGAGGATTATTGTCTGAAGGTTCATCTTCTTCATCCTATTGTCCCACAGCAGAGCACATACAAGATCCTTTCAACCAAGATAGAGATTAAGATGAAGAAGACTGAAGCCATACAGTGGGAAAAACTTCAAGGAGAAGAGACACTCTCCAACGTGAAGCATTTTACTGCAAGCCAGTATCCATCGTCATCCCACTACACACGAAACTGGGACAAGTTAGTGGGAGAAATAAAGGAGGAGGAAAAGAAGGAAAATCTGGAGGGTGATGCTGCTCTCAACAAGCTTTTTCAACAGATCTATTCGGATGGCTCGGATGATGTCAGACGGGCAATGAACAAGTCTTTTATGGAATCAGGAGGCACTGTCCTCAGCACCAACTGGATAGATGTTGGTAAACGGAAAGTAGAGATGAACCCGCCTGATGACGTAgagtggaaaaaatattaaaataggtAGATGACATTGTCTAAACTACCATCACCAGTTTGTCCTTACCCACTTCTTCAGTTGGTCAGACTTCTTCCTTTGTCAGACCCAGAATAGTTCTGGAATAAAATGAGATTTTTAACTTTTCTCTCTCTAGAATTAGTTTGTGTTTAACTAAACTAGcctattacatttttaaagcatcACACATTAAAACAAATCAGCAGCTAAACATCTGTACTGAAAGTCACTTTTGCCGCTGTTAGGTCTCCACCTGTATAACAACATCTGTTAATTTTGATCACTGTTTTTATGTACTTGTGCGTTCCTAAATATGCTTTTGACATgctgtaaataaatgtttcttttttttcttgctctGTGATTGGGGTGCCCTTGGTCTCTTATCAAtcttttacatcttgtaaagaaCTCTTGCATATTTTGAAGAAACTCTTTTTCattcagcaaaataaataaatcaataaatgcgTTACA

Function

GO:

id name namespace
GO:0031647 regulation of protein stability biological_process
GO:0050821 protein stabilization biological_process
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04621 NOD-like receptor signaling pathway
ko04626 Plant-pathogen interaction

ZFIN:

id description
ZDB-GENE-041114-56 Predicted to be involved in protein stabilization. Orthologous to human SUGT1 (SGT1 homolog, MIS12 kinetochore complex assembly cochaperone).

Ensembl:

ensembl_id ENSDART00000166819

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003079 lncRNA upstream 261080 27713379 ~ 27716251 (+) False XLOC_000329
TCONS_00003078 lncRNA upstream 1236182 26740115 ~ 26741149 (+) True XLOC_000327
TCONS_00003077 lncRNA upstream 1307228 26664689 ~ 26670103 (+) False XLOC_000325
TCONS_00000545 lncRNA upstream 1307446 26668026 ~ 26669885 (+) True XLOC_000325
TCONS_00000540 lncRNA upstream 1326104 26649027 ~ 26651227 (+) True XLOC_000324
TCONS_00000568 lncRNA downstream 12472 28031697 ~ 28036148 (+) False XLOC_000333
TCONS_00000570 lncRNA downstream 12483 28031708 ~ 28036148 (+) False XLOC_000333
TCONS_00003080 lncRNA downstream 452974 28472199 ~ 28473413 (+) True XLOC_000335
TCONS_00000576 lncRNA downstream 884545 28903770 ~ 28904635 (+) True XLOC_000336
TCONS_00000577 lncRNA downstream 1049424 29068649 ~ 29071356 (+) False XLOC_000337
TCONS_00000561 mRNA upstream 82514 27867706 ~ 27894817 (+) False XLOC_000331
TCONS_00000562 mRNA upstream 83310 27868294 ~ 27894021 (+) True XLOC_000331
TCONS_00000560 mRNA upstream 116183 27825980 ~ 27861148 (+) True XLOC_000330
TCONS_00000559 mRNA upstream 116187 27808916 ~ 27861144 (+) False XLOC_000330
TCONS_00000558 mRNA upstream 244152 27713380 ~ 27733179 (+) True XLOC_000329
TCONS_00000569 mRNA downstream 12472 28031697 ~ 28046806 (+) False XLOC_000333
TCONS_00000571 mRNA downstream 12483 28031708 ~ 28045997 (+) False XLOC_000333
TCONS_00000572 mRNA downstream 12528 28031753 ~ 28036214 (+) False XLOC_000333
TCONS_00000573 mRNA downstream 12529 28031754 ~ 28036471 (+) False XLOC_000333
TCONS_00000574 mRNA downstream 12667 28031892 ~ 28047242 (+) True XLOC_000333
TCONS_00000557 other upstream 246351 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000518 other upstream 1857707 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 2857126 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 3592634 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 3862773 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000579 other downstream 1049437 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000608 other downstream 1812534 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000617 other downstream 2146728 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000618 other downstream 2208166 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000628 other downstream 2936700 30955925 ~ 30965004 (+) True XLOC_000366

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000362_00452706_00460250.mRNA True 808 mRNA 0.42 5 CI01000362 452426 ~ 460250 (-)