Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00069747 |
| length | 1777 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 5 |
| gene id | XLOC_035569 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 19504011 ~ 19512270 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | biological_process |
| GO:0048280 | vesicle fusion with Golgi apparatus | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0042470 | melanosome | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0012507 | ER to Golgi transport vesicle membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0031201 | SNARE complex | cellular_component |
| GO:0005484 | SNAP receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-5488 | Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein). |
| ensembl_id | ENSDART00000159044 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00072176 | lncRNA | upstream | 271336 | 19227835 ~ 19232675 (+) | True | XLOC_035566 |
| TCONS_00071923 | lncRNA | upstream | 770417 | 18709974 ~ 18733594 (+) | True | XLOC_035563 |
| TCONS_00071922 | lncRNA | upstream | 1091983 | 18410984 ~ 18412028 (+) | True | XLOC_035556 |
| TCONS_00072175 | lncRNA | upstream | 1535777 | 17962829 ~ 17968234 (+) | True | XLOC_035551 |
| TCONS_00072174 | lncRNA | upstream | 2096931 | 17368041 ~ 17407080 (+) | True | XLOC_035546 |
| TCONS_00069750 | lncRNA | downstream | 2087 | 19514357 ~ 19516262 (+) | False | XLOC_035570 |
| TCONS_00069751 | lncRNA | downstream | 4333 | 19516603 ~ 19520119 (+) | True | XLOC_035570 |
| TCONS_00072177 | lncRNA | downstream | 151184 | 19663454 ~ 19715690 (+) | False | XLOC_035573 |
| TCONS_00072178 | lncRNA | downstream | 151190 | 19663460 ~ 19715690 (+) | False | XLOC_035573 |
| TCONS_00072180 | lncRNA | downstream | 151316 | 19663586 ~ 19715690 (+) | False | XLOC_035573 |
| TCONS_00069744 | mRNA | upstream | 3657 | 19489854 ~ 19500354 (+) | False | XLOC_035568 |
| TCONS_00069745 | mRNA | upstream | 3948 | 19489928 ~ 19500063 (+) | True | XLOC_035568 |
| TCONS_00069743 | mRNA | upstream | 144177 | 19356072 ~ 19359834 (+) | True | XLOC_035567 |
| TCONS_00069741 | mRNA | upstream | 663317 | 18830759 ~ 18840694 (+) | True | XLOC_035564 |
| TCONS_00069739 | mRNA | upstream | 856648 | 18624658 ~ 18647363 (+) | True | XLOC_035561 |
| TCONS_00069749 | mRNA | downstream | 2024 | 19514294 ~ 19520341 (+) | False | XLOC_035570 |
| TCONS_00069752 | mRNA | downstream | 36715 | 19548985 ~ 19619792 (+) | True | XLOC_035571 |
| TCONS_00069753 | mRNA | downstream | 109241 | 19621511 ~ 19638362 (+) | False | XLOC_035572 |
| TCONS_00069754 | mRNA | downstream | 109461 | 19621731 ~ 19638362 (+) | False | XLOC_035572 |
| TCONS_00069755 | mRNA | downstream | 112319 | 19624589 ~ 19638362 (+) | True | XLOC_035572 |
| TCONS_00069742 | other | upstream | 480634 | 19023261 ~ 19023377 (+) | True | XLOC_035565 |
| TCONS_00069740 | other | upstream | 833649 | 18670237 ~ 18670362 (+) | True | XLOC_035562 |
| TCONS_00069707 | other | upstream | 2406946 | 17087060 ~ 17097065 (+) | True | XLOC_035542 |
| TCONS_00069704 | other | upstream | 2430640 | 17069577 ~ 17073371 (+) | False | XLOC_035540 |
| TCONS_00069701 | other | upstream | 2693758 | 16772174 ~ 16810253 (+) | True | XLOC_035537 |
| TCONS_00069759 | other | downstream | 439463 | 19951733 ~ 19952380 (+) | False | XLOC_035578 |
| TCONS_00069760 | other | downstream | 439507 | 19951777 ~ 19952379 (+) | True | XLOC_035578 |
| TCONS_00069761 | other | downstream | 446215 | 19958485 ~ 19959118 (+) | False | XLOC_035579 |
| TCONS_00069762 | other | downstream | 446242 | 19958512 ~ 19959117 (+) | True | XLOC_035579 |
| TCONS_00069763 | other | downstream | 452953 | 19965223 ~ 19965872 (+) | False | XLOC_035580 |
