RNA id: TCONS_00069745


Basic Information

Item Value
RNA id TCONS_00069745
length 1724
RNA type mRNA
GC content 0.40
exon number 12
gene id XLOC_035568
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19489854 ~ 19500354 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTCAATGTTCAGTGCGCTGAGAGAGACAAGAGAATAATACTGACCGTGAGAGGAAGAAATGTCTCAACGCTTCAAAAAACTCACAGGGCTCGTGGCAGCTACATTCACTCCACTCACTGCAGAAGGGGAGATCAACCTGTCTGTAATTGCAGCGTACGTCGATTACCTAATAGAGAAACAGAATGTCAAGAGTGTGTTTGttaatggCACAACAGGTGAAGGCTGTTCTCTGACTGTAGACGAAAGGAAGCAGCTTGCTGCAGCTTGGTGCCAACATGGAAAGGGCAAgcttGAGCAAGTGATTGTCCATGTTGGCTGCATGAGTATAAAAGACTCTCAAGAACTGGCTCGGCATGCAGCCAGTATAGGGGCTGATGGCATATCAGTAATATCTCCATCCTATTTTAAACCCATCAATGCAGACGCATTGAGGTTGTTCATAAAGGAAGTGAGTGCCTCTGCTCCAGATCTTCCTATGTATTATTATCATCTTCCAGGCATGACCGGTGTTGCATTAGAGGCAGCTGATGTGCTGAATGGAATCGAGAGGGAGATTCCATCATTTCAGGGAGTGAAATACAGCGGGACGGATCTGAGGGATCTCGGACAGTGTGTTTGTTACAGTCAGTCGCGTGACTGGTCTGTCCTGTATGGAGTAGATGAGCAGCTCTTGGGTGCTTTGGTGCTTGGTGTTCACGGAGCAGTGGGGAGCACATATAACTACCTCGGACACATAGTGAACCAGATGCTTTCTGCTTTTAATAACGGCAACCACACGCAGACCAGAGCCCTGCAGTTTGGATTTATGGAAGTCATCACATTTGCCAGGACTCTTGGTTTTGATGTGTCTGTGAATAAGCAGGTGATGAGTGAAGTATCAGGGTTACCAATGGGTCCTCCTCGACTTCCATTACTGCCATGTCCTGTCTCAAAAGCCCAAGCTATAGCACAGAAAATCCACAACTTCACTCAGGGACTTTAAAATGAATGTAGAGATTTCAGTAAATCTAACTGAAATTCCAAACAAATAATCTGTACTGTTTCTTTACACTACAGGATGTtgatgtactgtatattttatgtttgcatgcttttatactttatattttcctgtttttttattgttaaccCATTTAGCCTTTCTTAGCATTTTCTATctgtaattaataacaataaatgaaaataacattgtCAATGAACCTACTTAAATTACCTAGCAGTTACTATTATTCCTCACTGTTACTGATATCTTTTCTCTGTTGTCATCATTTTCTATAAGTTTATGGGATTTCTGTGTTTTAATTGTTTGTGTCTTATTGCACAATGTAGCTTAATGCACACACATACTATATGTCTTTACAATATACTTTTGGTTTTGTATTGTTCAGTACAGTATTGATTACACTTTGGCTGTTGATACAATTGTTATTAATTCAGGCTGCTGAGAAAATGGTTGCAGGGTCAGCCATGATACCATTGTGTTCTTTTGTGACAAGTGGCTTTTTTACACCAATTGCACTGCATGTAATGTACAACAAAAATCAGTTTTATCAGTGTTTTATGCTCCATTTCAAAAGCGATATGTGTATCAGGTTCTTCGTAGTAGACACTGTGGTCTATgcttaatatttctaaaaaatctTATGTTTGCAAAGAACCATTTAAAAAGGGACATTTTTATTAATGCTGTATTCattgaataaaactaaatgcAAGTCTTTC

Function

GO:

id name namespace
GO:0019262 N-acetylneuraminate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008747 N-acetylneuraminate lyase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

ZFIN:

id description
ZDB-GENE-030131-926 Predicted to enable N-acetylneuraminate lyase activity. Acts upstream of or within N-acetylneuraminate catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including fin bud; gut; muscle; vein; and yolk syncytial layer. Used to study myopathy. Orthologous to human NPL (N-acetylneuraminate pyruvate lyase).

Ensembl:

ensembl_id ENSDART00000011258

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072176 lncRNA upstream 257253 19227835 ~ 19232675 (+) True XLOC_035566
TCONS_00071923 lncRNA upstream 756334 18709974 ~ 18733594 (+) True XLOC_035563
TCONS_00071922 lncRNA upstream 1077900 18410984 ~ 18412028 (+) True XLOC_035556
TCONS_00072175 lncRNA upstream 1521694 17962829 ~ 17968234 (+) True XLOC_035551
TCONS_00072174 lncRNA upstream 2082848 17368041 ~ 17407080 (+) True XLOC_035546
TCONS_00069750 lncRNA downstream 14294 19514357 ~ 19516262 (+) False XLOC_035570
TCONS_00069751 lncRNA downstream 16540 19516603 ~ 19520119 (+) True XLOC_035570
TCONS_00072177 lncRNA downstream 163391 19663454 ~ 19715690 (+) False XLOC_035573
TCONS_00072178 lncRNA downstream 163397 19663460 ~ 19715690 (+) False XLOC_035573
TCONS_00072180 lncRNA downstream 163523 19663586 ~ 19715690 (+) False XLOC_035573
TCONS_00069743 mRNA upstream 130094 19356072 ~ 19359834 (+) True XLOC_035567
TCONS_00069741 mRNA upstream 649234 18830759 ~ 18840694 (+) True XLOC_035564
TCONS_00069739 mRNA upstream 842565 18624658 ~ 18647363 (+) True XLOC_035561
TCONS_00069738 mRNA upstream 866824 18615938 ~ 18623104 (+) True XLOC_035560
TCONS_00069737 mRNA upstream 896394 18588590 ~ 18593534 (+) True XLOC_035559
TCONS_00069746 mRNA downstream 3948 19504011 ~ 19512268 (+) False XLOC_035569
TCONS_00069747 mRNA downstream 3948 19504011 ~ 19512270 (+) False XLOC_035569
TCONS_00069749 mRNA downstream 14231 19514294 ~ 19520341 (+) False XLOC_035570
TCONS_00069752 mRNA downstream 48922 19548985 ~ 19619792 (+) True XLOC_035571
TCONS_00069753 mRNA downstream 121448 19621511 ~ 19638362 (+) False XLOC_035572
TCONS_00069742 other upstream 466551 19023261 ~ 19023377 (+) True XLOC_035565
TCONS_00069740 other upstream 819566 18670237 ~ 18670362 (+) True XLOC_035562
TCONS_00069707 other upstream 2392863 17087060 ~ 17097065 (+) True XLOC_035542
TCONS_00069704 other upstream 2416557 17069577 ~ 17073371 (+) False XLOC_035540
TCONS_00069701 other upstream 2679675 16772174 ~ 16810253 (+) True XLOC_035537
TCONS_00069748 other downstream 3964 19504027 ~ 19509241 (+) True XLOC_035569
TCONS_00069759 other downstream 451670 19951733 ~ 19952380 (+) False XLOC_035578
TCONS_00069760 other downstream 451714 19951777 ~ 19952379 (+) True XLOC_035578
TCONS_00069761 other downstream 458422 19958485 ~ 19959118 (+) False XLOC_035579
TCONS_00069762 other downstream 458449 19958512 ~ 19959117 (+) True XLOC_035579

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_03109809_03114298.mRNA True 932 mRNA 0.47 11 CI01000010 3109803 ~ 3114298 (-)