RNA id: TCONS_00070438


Basic Information

Item Value
RNA id TCONS_00070438
length 2144
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_035945
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45334255 ~ 45352219 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTATTTGCTTTAACACCAGGTAACTAACTAATATTACTTCTCCAGGTATCTTCGAATTGTTTAAAGAAATATACAAAAGTAGTGCTTCTGAAGGATGAACAGCGGCGGACCAGCATATCCATTAGCCTCTCTGTATGTCGGTGACCTTCATGCTGATGTCACAGAGGCCATGCTATACCAGAAGTTCTCTCCTGCTGGTCAGATCATGTCCATTCGTGTTTGCCGTGATGTAATTACGCGGAGATCCCTTGGATATGCTTACATAAACTTCCAGCAGCCTGCTGATGCGGAGTGTGCCCTTGACACAATGAACTATGAAGTCATTAAAGGTCGCCCAATCAGGATCATGTGGTCACAGCGAGATCCTGGTCTGAGAAAGTCTGGTGTGGGAAACATCTTCATCAAGAACATGGATGAGTCTATTGACAACAAGGCTCTTTATGACACCTTTTCTGCTTTTGGTAACATCTTGTCATGTAAGGTAGTTTGTGATGAAAACGGCTCAAAGGGTTATGGGTTTGTGCACTTTGAGACCCAAGAAGCAGCTAACAGAGCAATTGAGACGATGAATGGCATGCTTCTGAATGATCGCAAAGTATTTGTAGGGCACTTTAAATCCCGTAAAGAGCGCGAGGCAGAGATGGGAGCTAAAGCTGTGGAGTTCACCAATGTGTATATTAAGAACTTTGGTGAAGACATTGACAGTGAGAAACTGAAGAATATCTTCACtgaatttgGTAAAACTCTTAGCGTCTGTGTGATGACTGATGAAAGGGGACGCTCCCGTGGCTTTGGATTTGTCAATTTTGTCAACCATGGCGATGCTAGGAGGGCAGTAACTGAAATGAATGGCAAAGAGCTCAATGGCAGGGTCCTGTATGTAGGCAGAGCTCAGAAAAGACTCGAGAGGCAGGGAGAGCTCAAGCGCAAGTTTGAGCAAATTAAGCAAGAGCGCATACAACGTTACCAGGGGGTTAATCTCTATGTGAAAAATCTGGATGACAGCATTGATGATGAGAAGTTGAGGAAGGAGTTTGCACCTTATGGAACCATCACCAGCGCAaagGTGATGACTGATGGAGGCCACAGTAGAGGCtttggatttgtttgtttttcctctccCGAAGAGGCCACAAAGGCAGTGACTGAGATGAACGGGCGTATTGTTAGCACTAAACCACTTTATGTGGCTCTTGCCCAAAGAAAAGAGGAACGAAAGGCCATCCTCACTAATCAGTACATACAGAGACTAGCCAGCATCCGAGCTATCCCTGGCCCTGCAATACCCACCACCTACCAGCAGGGCTCCGGTTACTACATGACCTCTGTGCCACAAGTTCGCTCTTTTTATAATGCTGTACCAAACCTGCGCCCTGCACCACGCTGGGCATCTCAAGCTCCTAGGACACAAGGTCCATTTCCAGCTCAGTTTGTGAGGCAAGCAGTGCCACGGAGGCCCTCCACTACCATCAGCACTGTCCGCCAGGCCTCCACTCAGGTTCCTCACATAAACAACACCCAACGAATGGCCAACATTGGGACCCAGACTGCAGGCGGGAGAGCTGCGGGAACTGCAGTCAGAGGAGTCAGCCAATACAAGTACTCAGCAGGGGTTCGAAACGTGCAACAGGTCATTAATGCCCCAGCTCCTGTTGTTCATCAGgttgtgCAAAATACAGAACCAGCAGTTCATATGAAAGGCCAGGAGCCCCTTACTGCCTCAATGCTGGCAGCTGCACCTTTAAAAGAGCAGAAACAACTACTGGGCGAGCGGCTGTACCCACTCATCCAGATTTTGCATCCTGCACTTGCGGGAAAGATCACAGGGATGCTGCTGGAGATTGATAACTCTGAGCTGTTACACATGCTGGAATCTCCAGAGTCTCTGCACGCTAAGGTCGAAGAGGCAGTAGCGGTGCTTCAGGCTCATCAAGCCAAGGAAATGTCAGCTAAGTGAGGGGGCTCTGAAAGGCATCCGACTGGAAGTCTTTGAATAGAGGAATGGTTCACAATGGCTCTTTAGAGTCATGCTATGTTAAGCGTGCTTCACACACTGCAAATGTTCTTTTGCTCTATCATTATGTTTTTTctgattttgtttattatataaaaaaggaaataatgACAAGTAAAatgacaaatgg

Function

GO:

id name namespace
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008143 poly(A) binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008266 poly(U) RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5836 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Part of protein-containing complex. Orthologous to human PABPC1L (poly(A) binding protein cytoplasmic 1 like).

Ensembl:

ensembl_id ENSDART00000183560

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071966 lncRNA upstream 110102 45223476 ~ 45224276 (+) True XLOC_035943
TCONS_00072267 lncRNA upstream 178211 45154888 ~ 45156167 (+) True XLOC_035941
TCONS_00070424 lncRNA upstream 405996 44926629 ~ 44928382 (+) False XLOC_035939
TCONS_00072264 lncRNA upstream 453977 44877984 ~ 44880401 (+) False XLOC_035938
TCONS_00072268 lncRNA downstream 81302 45433272 ~ 45437216 (+) True XLOC_035948
TCONS_00072269 lncRNA downstream 87651 45439621 ~ 45440571 (+) True XLOC_035949
TCONS_00070444 lncRNA downstream 92523 45444493 ~ 45445030 (+) True XLOC_035950
TCONS_00072270 lncRNA downstream 96900 45448870 ~ 45451410 (+) True XLOC_035951
TCONS_00071967 lncRNA downstream 117024 45468994 ~ 45472217 (+) True XLOC_035952
TCONS_00070431 mRNA upstream 5726 45293743 ~ 45328652 (+) False XLOC_035944
TCONS_00070433 mRNA upstream 5727 45294767 ~ 45328651 (+) True XLOC_035944
TCONS_00070432 mRNA upstream 37173 45293754 ~ 45297205 (+) False XLOC_035944
TCONS_00070430 mRNA upstream 141650 45186989 ~ 45192728 (+) True XLOC_035942
TCONS_00070427 mRNA upstream 323823 45003659 ~ 45010555 (+) False XLOC_035940
TCONS_00070441 mRNA downstream 9805 45361775 ~ 45375108 (+) True XLOC_035946
TCONS_00070442 mRNA downstream 29328 45381298 ~ 45385376 (+) False XLOC_035947
TCONS_00070443 mRNA downstream 29379 45381349 ~ 45395315 (+) True XLOC_035947
TCONS_00070446 mRNA downstream 389074 45741044 ~ 45774933 (+) False XLOC_035956
TCONS_00070447 mRNA downstream 389074 45741044 ~ 45779978 (+) True XLOC_035956
TCONS_00070426 other upstream 366347 44959287 ~ 44968031 (+) True XLOC_035939
TCONS_00070415 other upstream 674451 44659813 ~ 44659927 (+) True XLOC_035933
TCONS_00070398 other upstream 2295918 43011613 ~ 43038460 (+) False XLOC_035918
TCONS_00070392 other upstream 2426554 42764234 ~ 42907824 (+) False XLOC_035916
TCONS_00070387 other upstream 2610554 42717004 ~ 42723824 (+) False XLOC_035915
TCONS_00070440 other downstream 9765 45361735 ~ 45374450 (+) False XLOC_035946
TCONS_00070445 other downstream 256570 45608540 ~ 45610783 (+) True XLOC_035954
TCONS_00070452 other downstream 706174 46058144 ~ 46064537 (+) True XLOC_035960
TCONS_00070463 other downstream 1414459 46766429 ~ 46766545 (+) True XLOC_035971
TCONS_00070466 other downstream 1702675 47054645 ~ 47064011 (+) True XLOC_035972

Expression Profile

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