RNA id: TCONS_00073877


Basic Information

Item Value
RNA id TCONS_00073877
length 2736
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_037620
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6963039 ~ 6991650 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACGTTGACAGAAACCAAAAATCTAGTTACACCGGCCTCTGCATCTGAGCAAAGAGGCAGACCGAGAGTCGCAGGTAGCCTAATCACACGCCCGTCTGCTTCACTTCAGAAATGAATGAAACAAGAtgtaaactattttaatatttgcatctTTTACATACACGGCAGCTAAAGGTATAAGGGAGAATGGTGCTTCATTTTCATGTTGGCTCGTCATTCAACTTTCAGGTTTTTTTGTGCATATGTTTTGCTTCTGTTGGATATGGAGAAAACGTCGATGTTACTACTAAAGCGACTGCTGGTTTTCCATCCAAATCTCCTCTTTGGAGCTCAAATGATGACACTGCTGGAACCGAAGCTGACAAAACCAATCCGGAGTTGTTTACACTGAACTACGCTCGCATTAAGATCCCGTTTGAGATCACTTTATGGGTGCTGCTGGCTTCCTTTGCCAAAATAGGTTTCAACGTCTATCATAAGATCACAGTCTGGGTGCCTGAGTCATGTTTGCTGATCTCCCTTGGCTTCGTAGTGGGAGGCGTCATGCACGCTGTGCGCAAGGAGCCGCCGGCGGTGATCTCCTCCAACGTCTTTTTCCTCTACATGTTGCCACCCATTATTCTAGAATCCGGCTACTTTATGCCCACTCGACCCTTCTTTGAAAACGTGGGCACAGTAATGTGGTTTGCTGTAGTTGGCACCTTGTGGAATACCATGGGCATCGGCATCTCCCTATTTGCCATCTGCCAGATAGAGGAGTTTGGTGTGCAGGACATTAACCTGCAGGAGAACCTCCTGTTCGCCGCCATCCTCTCAGCTGTTGAACCGGTGGCTGTGCTCAGTGTGTTTGAGGACATCAGCATCAACGAGCAGCTCTACATTGTGATGTTCGGAGAGTGTCTGTTCAATGATGCTGTCACTGTGGTACTGTATAATCTCTTCAATCATGTAGCAGCGATGGAAGTGGATGAACCTGCAGTCATTTTCATGGACATTGGCGGATTTTTTGTGGTGGGTTTGGGTGGGATATTCTTCGGCTTGCTGTTTGGGTTTTTGACAGCCTTCACCACACGTTTTACTGGAAAAGTGAGAGAGATCGAGCCCCTGGTCATCTTCATGTTCAGTTACATGTCCTACCTCATCGCTGAGCTATTTGCACTCTCCAGCATCATGGCTATCTTAATCTGCACCTTGAGTATGAAGTACTACGTTGAGGAGAATGTGTCCCAGCGCTCCTGCACCACTATTCGCCATGTCATTAAGATGGTTGGAAGTGTGTCGGAAACACTGATCTTCTTTTTTCTGGGTGTTGTTTCAATCACAACGGAGCACGAGTGGAACTGGGGCTACATCCTCTTTACTTTGTTCTTTACTCTGTTTTGGAGGTTCCTGGgAATCCTGGTCTTAACACAGATCATTAACCCTTTCCGCAAGATTCCTTTCAACTTCCAAGATCAGTTTGGTTTAGCCTACGGTGGGCTGAGAGGAGCTCTGTCCTTTGCCTTGGCCTTTACCCTACCAAACAGCATTCCTCACAGAAAGCTGTTCATCACAGACACGATTGCCGTCATCATCTTCACAGTTTTCATTCAAGGAATAACTATTAGACCCCTTCTAAAGTTAATGAATATCCGTAAGACGAATCGGAACTTGGAGACAATCAATGATGAGATTCACAAACGGTTAATGGAGCACACAGTCGCCGGCATAGAAGATCTATGTGGACAATGGAGTCACTACCGCTGGAAAGACATGTTCATGAAGTTCAATAACCGGTTCATTCGCAAGATTTTAATCCGCGATAATCGTCCCGAATCAAGTATTGTGTCTCTGTATAAGAAACTGGAGCTTCGAAACGCCTTGGAGATTCTGGACACGATGTCTGGTGACATCAGCGCAGCTCCCTCCTTAATGTCATTATATGAAGAGAGAAAGAACGCCTCGAAGCATAAGAAGTTCCTACCATCCGATGTTGAAAATATGCATGAACTCTTATCGAAGAACATGTACAAGATCAGACAGAGGACTGTGTCATACACTAATAGGCATTCGCTACCCAATGAGAACATCGCCAAAGAGATCCTGATGAGACGCCACACAACCATACGAAGTAGCCTCAGATCTGGAAGCTTCCATGCCACTAATTCAGCAAATACGTCCCACAAGTTTTCCTCTCTGCCGGTGGGTCAGAGTTTAAACTCTGGATTTCCTCCAGGAAGATTCCGACATACTGACCACATTGATGCTGAATCTGAGACTGCGTATCCATCAAACAGATCAACGTTCAGGCATCAGCGGAGATCGTCATCTAAAGCAGGGATTCCTCTCAGGCCGCTGAACGATCTGAGGGAAGATAATGAACCAAATGAAGAAATTCCTTACAAGATGTCACATCCAAGGTCAAAATTCAGACATTCAGGACATCAAACCTCACGTCAGTATTATGGCACATCTAGAAACTGTAGGGACACAGACTTTGAAGAGCAGCAGTCGAGCTTGTCTCCTCATGGATGGACAGAGGAACCACAAAACAACAGTGATGTCCAACATCCCCTGATGAGAAAACCACAGTAGATGCGACAGAAACCACATGAACAATGTGATCATACTTTTAAAGCAGCTGACCTGACATTACTTGATCCGACTACTTTGAAACGAagtaaacaatgcaaaagaagtCTACGTGTGAGAAAGGGAAGAACGTTCTCCATGTTAAACAAAATTCTGCTCAAATA

Function

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0051453 regulation of intracellular pH biological_process
GO:0042539 hypotonic salinity response biological_process
GO:0055085 transmembrane transport biological_process
GO:0098719 sodium ion import across plasma membrane biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function
GO:0015299 solute molecular_function
GO:0015385 sodium molecular_function
GO:0015386 potassium molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070912-541 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Acts upstream of or within hypotonic salinity response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in gill; intestine; kidney; and testis. Orthologous to human SLC9A2 (solute carrier family 9 member A2).

Ensembl:

ensembl_id ENSDART00000081718

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074961 lncRNA downstream 414243 6531549 ~ 6548796 (-) True XLOC_037614
TCONS_00073869 lncRNA downstream 460946 6414784 ~ 6502093 (-) True XLOC_037612
TCONS_00075290 lncRNA downstream 1917050 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073852 lncRNA downstream 1918951 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075289 lncRNA downstream 2095600 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073887 lncRNA upstream 366169 7357819 ~ 7359484 (-) True XLOC_037626
TCONS_00075291 lncRNA upstream 507610 7499260 ~ 7505531 (-) True XLOC_037631
TCONS_00075292 lncRNA upstream 950119 7941769 ~ 7942597 (-) True XLOC_037636
TCONS_00075293 lncRNA upstream 1168691 8160341 ~ 8163995 (-) True XLOC_037637
TCONS_00075294 lncRNA upstream 1292505 8284155 ~ 8286208 (-) True XLOC_037638
TCONS_00073876 mRNA downstream 35452 6915611 ~ 6927587 (-) True XLOC_037619
TCONS_00073874 mRNA downstream 301373 6658699 ~ 6661666 (-) True XLOC_037617
TCONS_00073872 mRNA downstream 301374 6658594 ~ 6661665 (-) False XLOC_037617
TCONS_00073873 mRNA downstream 301382 6658699 ~ 6661657 (-) False XLOC_037617
TCONS_00073871 mRNA downstream 338376 6623536 ~ 6624663 (-) True XLOC_037616
TCONS_00073878 mRNA upstream 89927 7081577 ~ 7089303 (-) True XLOC_037621
TCONS_00073880 mRNA upstream 99378 7091028 ~ 7213772 (-) False XLOC_037622
TCONS_00073879 mRNA upstream 99378 7091028 ~ 7213772 (-) False XLOC_037622
TCONS_00073881 mRNA upstream 105345 7096995 ~ 7212973 (-) True XLOC_037622
TCONS_00073882 mRNA upstream 236433 7228083 ~ 7238839 (-) True XLOC_037623
TCONS_00073875 other downstream 245238 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 553768 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 2515935 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073830 other downstream 3443328 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 3466460 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073897 other upstream 530785 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 650110 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073935 other upstream 2751909 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 2778685 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 3854268 10845918 ~ 10846549 (-) True XLOC_037667

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_02065346_02075634.mRNA True 2895 mRNA 0.43 12 CI01000037 2065276 ~ 2076284 (+)