RNA id: TCONS_00073965


Basic Information

Item Value
RNA id TCONS_00073965
length 959
RNA type processed_transcript
GC content 0.44
exon number 2
gene id XLOC_037669
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11548233 ~ 11551704 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCATAATATTTAACCTCTTTTACTGAGAATTGTTATTTATAAATGGgcgaaattctttttttttctcaaaaattacAGGGACAAAAACACATGTCTGACGCATATgctgcatttttattattgtcacttccatgtgtattttaaaattaccACAGAATATGGCATAATTAAATCTGAGTTATAATTGtcagatgtttttttaaaacGCTTTTTTCCAGACCCCACAGAAAATCTTCTGAAGGAAAGTAAAAGCCCCTCTTGGACCCCCATCAACACAGGCGTGCAAAAAGgaAGTGGACAAATCCAGTTATGGCAGTTTCTCCTGGAGCTGCTTTCCGACAGCGCCAATATGACCTGCATCGCCTGGGAGGGAACGAATGGAGAGTTTAAACTGATAGACCCGGACGAAGTGGCCAGACGGTGGGGGGAACGCAAGAGTAAACCGAACATGAACTACGACAAACTGAGCCGAGCTCTGCGCTATTACTACGACAAAAACATCATGACCAAGGTGCACGGAAAGCGCTACGCGTACAAATTTGACTTTAACGGTTTGGCGCAAGTGTGCCAGCCCTCCTCGACCGAACAAGCTATTTATAAGTTCCAGAGCAACTTCGCTCCCATTCAGTTTTCAGGTATTTCCAAACTCAATCTGGTTGCTCCGGGTGTTGGTCCGTCGGGCTTCTCCTACTGGCCGGGATCTCCTCCAACCCTCTACCACAGCCACAACCTGCAGCCGCCTGGACCCTTCGGTGCCGTGTCTGCGTCACATTTAAGCTGcgttaacaatataaatagtttaaataacctcaataatattaataaccacTATAACTGACTTTCCCCCATCTGCCTCAGGAGCGCGCGCTGACAGACTAGCCTACACAAGAGTAATATGTAAAAGTTCAACTAGCTGATTTCAGAACACGTAGACTAATATAGTTCAGTGACAAGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070112-1852 Enables transcription cis-regulatory region binding activity. Acts upstream of or within hematopoietic stem cell differentiation and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including brain; endothelial cell; pancreatic bud; presumptive blood; and serotonergic neurons. Orthologous to human FEV (FEV transcription factor, ETS family member).

Ensembl:

ensembl_id ENSDART00000013057

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074962 lncRNA downstream 1178147 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073926 lncRNA downstream 2177906 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 2259702 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 2259712 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 2259733 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00073971 lncRNA upstream 4679 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 6809 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 20915 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 20915 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00075300 lncRNA upstream 45590 11595987 ~ 11598944 (-) False XLOC_037673
TCONS_00073962 mRNA downstream 285544 11245962 ~ 11263228 (-) True XLOC_037668
TCONS_00073959 mRNA downstream 743541 10781687 ~ 10805231 (-) False XLOC_037666
TCONS_00073958 mRNA downstream 743541 10781687 ~ 10805231 (-) False XLOC_037666
TCONS_00073960 mRNA downstream 743976 10787279 ~ 10804796 (-) True XLOC_037666
TCONS_00073957 mRNA downstream 770157 10778227 ~ 10778615 (-) True XLOC_037665
TCONS_00073968 mRNA upstream 3692 11554089 ~ 11560110 (-) False XLOC_037670
TCONS_00073969 mRNA upstream 3962 11554359 ~ 11560427 (-) False XLOC_037670
TCONS_00073970 mRNA upstream 4008 11554405 ~ 11560432 (-) False XLOC_037670
TCONS_00073974 mRNA upstream 26105 11576502 ~ 11587070 (-) True XLOC_037672
TCONS_00073975 mRNA upstream 47103 11597500 ~ 11655031 (-) False XLOC_037673
TCONS_00073961 other downstream 702223 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073935 other downstream 1743453 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other downstream 1743453 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073901 other downstream 3893471 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 4009749 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073967 other upstream 1207 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073973 other upstream 21576 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073978 other upstream 271982 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073998 other upstream 1031869 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 1034246 12584643 ~ 12594723 (-) False XLOC_037682

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000036_01396572_01398922.mRNA True 1273 mRNA 0.43 4 CI01000036 1396055 ~ 1398922 (-)