RNA id: TU91322


Basic Information

Item Value
RNA id TU91322
length 976
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G68349
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41366584 ~ 41404814 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGGTGTTTGTAGTAGATAGTACATTTAACGTTTCAAATTATTTTCCTATAAAAGCTACTTACATAAAGAAGGTCTGCCCTGTGGAGAGGGCTGGGGTCAATGTGTCAGTGGTAACAGCCTCAATGGACAGTGGGCTGTCACAGATTTGTCCTGGGTTTTCTGTCCTCAGGTTAGTCAAAGTCTCCCAGTCCCCTGTTCCACTGGGAGCGTCCCGGTTATACCACTGGGTCCAGCACACTTTACATAAAGAAGGTCTGCCCTGTGGAGAGGGCTGGGGTCAATGTGTCAGTGGTAACAGCCTCAATGGACAGTGGGCTGTCACAGATTTGTCCTGGGTTTTCTGTCCTCAGGTTAGTCAAAGTCTCCCAGTCCCCTGTTCCACTGGGAGCGTCCCGGTTATACCACTGGGTCCAGCACACTTTACATAAAGAAGGTCTGCCCTGTGGAGAGGGCTGGGGTCAATGTGTCAGTGGTAACAGCCTCAATGGACAGTGGGCTGTCACAGATTTGTCCTGGGTTTTCTGTCCTCAGGTTAGTCAAAGTCTCCCAGTCCCCTGTTCCACTGGGAGCGTCCCGGTTATACCACTGGGTCCAGCACACTGCAAGGAACAATGAAAGAGACATGCTGGAGGGAAACTGCAGAGCCAAAACaccattctaaataaatacttgGGCACATATATAATGTAAGAGAAGGGGAAGTACGCATAGCCTACGATGTAGCCGATGAACCCTAAATCAAGCTTAACACTGCACATGAATGTGTTCAGACAGTACCTTTACAGAAAGAAGGGCAGCTGAAACGAACACTATAATCATTACACATCTTATTCCTGGGTTGGTCCTGGTTCCTGCAGACAAATCCTGTAGTGGTGTCACTTCTGAAAAAAGAAACAGTAGCATGCTAGTGGCATGGATCTAAGACAGAAAATTTCAGTCGGTCATCTTTCTGTTGGTCATTTGGTCCAGACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91284 lncRNA upstream 95735 41135777 ~ 41270849 (+) False anxa1a
TU91285 lncRNA upstream 95735 41135777 ~ 41270849 (+) False anxa1a
TU91286 lncRNA upstream 95735 41179725 ~ 41270849 (+) False anxa1a
TU91296 lncRNA upstream 152248 41213523 ~ 41214336 (+) False G68340
TU91295 lncRNA upstream 152248 41214002 ~ 41214336 (+) True G68340
TU91329 lncRNA downstream 20366 41420939 ~ 41484804 (+) True G68356
TU91331 lncRNA downstream 31813 41432386 ~ 41480024 (+) True G68358
TU91333 lncRNA downstream 79012 41479585 ~ 41549693 (+) False G68358
TU91381 lncRNA downstream 80670 41481243 ~ 41552744 (+) False G68374
TU91366 lncRNA downstream 83486 41484059 ~ 41552744 (+) False G68374
XM_039804053.1 mRNA upstream 99065 41266647 ~ 41267519 (+) True LOC120561097
XM_039802432.1 mRNA upstream 111962 41222702 ~ 41254622 (+) True LOC120560189
XM_039802431.1 mRNA upstream 151714 41193223 ~ 41214870 (+) False anxa1a
XM_039804052.1 mRNA upstream 268788 41081607 ~ 41097796 (+) True LOC120561096
XM_039802429.1 mRNA upstream 295678 41054751 ~ 41070906 (+) True rorb
XM_039802520.1 mRNA downstream 197654 41598227 ~ 41605767 (+) True lsm1
XM_039802490.1 mRNA downstream 209359 41609932 ~ 41619652 (+) True LOC120560217
XM_039802486.1 mRNA downstream 230163 41630736 ~ 41635889 (+) True LOC120560213
XM_039802487.1 mRNA downstream 240757 41641330 ~ 41654650 (+) True LOC120560214
XM_039802489.1 mRNA downstream 298789 41699362 ~ 41702500 (+) True LOC120560215
TU91301 other upstream 99110 41266726 ~ 41267474 (+) False LOC120561097
TU91279 other upstream 104234 41207784 ~ 41262350 (+) False anxa1a
TU91281 other upstream 104234 41207784 ~ 41262350 (+) False anxa1a
TU91283 other upstream 104234 41207784 ~ 41262350 (+) False anxa1a
TU91278 other upstream 107033 41207784 ~ 41259551 (+) False anxa1a
TU91431 other downstream 320440 41721013 ~ 41756128 (+) False aebp1b
TU91472 other downstream 509251 41909824 ~ 42005961 (+) True G68429
TU91474 other downstream 531990 41932563 ~ 41934316 (+) False LOC120561105
TU91478 other downstream 531990 41932563 ~ 41934316 (+) False LOC120561105
TU91611 other downstream 921900 42322473 ~ 42396643 (+) True G68504

Expression Profile