RNA id: XM_034304641.1


Basic Information

Item Value
RNA id XM_034304641.1
length 5248
RNA type mRNA
GC content 0.51
exon number 23
gene id pard3bb
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 20552393 ~ 20825374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTTAGCAGTGAAGTGTGTACTGGCCCTTTAAGAAAGTTCCAGCGCGGCCCAGTAAAGTTTGGCACGGCGGCGGCGGCGGAGGCTCAGGCAGAGCAGCGGAATGGCGAGGAGAGAAAATATTGATGCAAAACAAAGCCGCGATTAATGGGAGCCGTTTGTAAACACGTGTTTTTGGCGGTGTGAATGGGACAGTTGGACTTTTTCCCAAAGGTCGAATAATAGAGGATGATAGCTGGTGGATAGCCAGGCACCGCGGATCAGAGGGTTTTTTTGCCGCTATAAGCCGCTTTGCCTCTCCATCTTTTTCCAAACTCCTGGTGAATTCAGCAGAAAAACAGCTCATTTCTCCCATTCTGCGATTAAAGATGAAGGTAACGGTCACTTTCGGCCGCACCGGGGTGGTGGTGCCCTGTAAGGAAGGCTGGACCGTACGAGACCTCATTCACCAAGCCACACAGAGATACAGGAAACTGCTTGAACAGGAGGGAGACTTCCTGGTGCGGACCCACCACGTCGAGTACTGTGATGGGggaattctggatcctgatgATGTGCTTTCGGATCTGGTGGAAGATAAGGACAAGCTAATTGCAGTGTATGAGGAACAAGAGGCCCGGCAAAGGGGAGCGACGAGTCCCGGGAACAGCAGCATTGGCGTcgttaacattaacacaaacgGCGGTTGTGCTCCAGGACAGCCGAGCCCTGAGCCCTACGACGCCGAACTCGTCTGTTTCCAGCCAATCCGAGGAGGGGAGATCGAAGTCAACTCCTCTGTTCTTAAAGCCAgcacACCTCTCATGGTGAGGAGCAGCAGTGACTCAGCTCTGGGCCCCTCGGGAGAGAACGGACCTGCACACAGTGAGACTGATATGGACCAGCAGTCAACAGACGTGTCCAACAGCAAAGCCTCTCCCTTCGCGCTCAGCCTAACGAAGACTGTGCAGATTTCAGGAGAACACGGGCCTCTTGGGATACACGTGGTGCCCTACTGCTCCTCTCTCAGTGgaagGGCTCTGGGTCTGCACATTCGGAGCGTGGAGGAGAACAGCCGCTCCAAAAGAGAAGGCATCTTCCAGGATGATGACTGCATCATCAAGATCAACGACACTGAGTTGATGGACAAGTCTTTTTCACAGTCACAGGAAGTGTTCCGGCAGGCCATGCGCTTGCCTGCTGTACGTTTAGAGGTTCTACCCATGGCAAATAAAGATCGCTTCGAGAAGAGTCTCATTGGCCACCTTTTCAGCACTGACAGCCATGACGGTACTCCCCGGCCCAAAGAGCCTCCTCCTCTGAAAGTGAAGCCCATGGTGAGACCTGCAGAGTCCTCCTCCTGCAGACAACCCGGACCTCAGGAGAGCACCAGCGTGAACATGGAGAGCCGTTCTCTCGGTTCCCCTCTTCCCATCAGCCTTTACCCAAGGGGCAAGAGCAGCAGCCCTCTGCTCAAAAAGAGCCACACCATCTCACCTCTGGTTGGGTTCACCACCAAGAAGGGAGGCAAGAGGCTCAAAATTGATCTGAAGAAAGGTCCGGAGGGTTTGGGCTTCACCGTGGTAACCAGAGACTCGTCAGTGCATGGGCCCGGTCCCATCCTCGTCAAAAACATCCTCCCTAGAGGAGCCGCTGTTAAGGATGGCCGCCTGCAGTCTGGAGACAGAATCTTAGAGgtgaaTGGTGTGGACATCACAGGTCGGACCCAGGAGGAGCTGGTGGCCATGCTGCGCAGCACGAAGCAGggagacagtgtgtgtctggtgGTGGCGAGGCAGGAGGAGTTATTCCTGCCCCGAGAGCTGaaAGAGGAACCGGTGCGTGCTACTCTGGCTGAGGAAGGGAAGGAGCAGCTGATGTTCGAGGTGCCTCTGAACGACTCGGGCTCAGCTGGCCTGGGTGTCAGCCTTAAAGGCAACAAGTCTCGTGAGACCGGTGAAGACCTGGGCATCTTCATCAAGTCCATCATCCATGGAGGAGCTGCTTATAAGGATGGTCGCCTGCGGGTCAACGATCAGCTGCTTGCTGTGAATGGAGAGTCACTCTTGGGAAAGTCCAACCACGAGGCCATGGAGACACTGCGCAGGTCCATGTCCATGGAGGGGAACCTCAGAGGGATGATCCAGCTAGTTGTTCTCCGAGCGCTTCCGCCCTCCAACCAGGAGTACCCGGACTCACGGAGAGTCCTCAATCGATCCTTTGATAGCTGCGTGGGCCAGACTGCActcctcagccaatcagagagcccTGTGCAGCCTCATATGGTGATGAACAACACCTTTGAACGATCTGTGGttTCAAATGGGGGTTATGCTGAAGAGATAGCATTCAGTCCTTATAGGCAGAATGGAGACCTGAATGGAGGTTTGAGCCATCAGCCCCATCAGAGTTTGGAGTGGGAATCAGGTCCTTGCTCAGCTGAAAGCTCTCTGACCTCTCAAGCTCCTCAGGGTATGATGGAGCATCACCACATCAAATCTTCCAAAAGTATGGACCTGGCTTTCTCTGGTGTGGAGCTGGGTCCTACTTTGGGCCTGAAAAAGTCCAGTTCTCTAGAGAGTCTGCAGACGGCCGTGTCCGAGGCTCAGAAGAACGACCTGCTGCTCTTCCACAGGCCTCGAGGTCACATGGTGAGGGGTCGTGGCTGCAACGAGAGCTTTCGTGCTGCCATTGACAAATCATACGATGGCCCGGCTGAGGAGGACGATGatgAAGGCTCAGAGGCAAGCTCGGGACGGGACACCCCAGCTAGCAGCTCCTCACGCCAAGGGCTGGGAGACAACGACGAGAACAAgaaggacaagaagaagaaagccaaaggaaagaagaaagacaaGTTGAAGAGCAAAGGGAAggacaaagacaaaaagaaagcagAGGAAGCCACCGAAGATCCAGAtaagaagacgaagaagaagggATTTGGACTGCTGAGgtttggaaagaagaaggaagagaagagtaaAGGTGAGAACAAGACGAGCACACCAAAGCATGCATCAGAAATGCTGAGTGAGGAAGAGTTGGAGAGGATgaaagaagagagggagagGATTGAAGCGAAGCACCAGGAGCTGAGAGATCGACAGGCTCGAGACCGCTTTGTTCCTCCGGATGTAGAGGATGACGATGTGGACCCCAACTACGCCCGGATCAACACGTTCAGAGGACGCCCGTCTCCGTCTCAGTCTCCATATGGGACCCGCAGCCCATCGCCTCAGAGAGCCACACACCCCACCAATCACAGTCGAGATCCATCAACTGAAGATCCGCTTGATGGCCTCTACGCCAAGATCAACAAACCGAGAGGCCCAAACCCACACGGGGCTGACagCAGTATGGACCGTATCCAGCAGCTGCGCAGAGAGTATCAGCAGGCTCGGAGAGAGGGAGCTGCTCCAGCCTACGAAGAGTTGGAGGCTCGACGCCAGTGCTCAGAGTACGACCCACACCGGATGCCTGTCAGGAGTCCCGACCCCAGACTGGCTCCCCGCTATGAGGACGTGGAGCGCCAGTATGCCTCCCTGCCCAGAAGGGGTCCAGTGGATCCTACTGAGTACCCAGGACAGGCTTGGCCCAGAGACCCTGCCCACTATACCGCCCCACAGCCAGGCTACCACTCCAACTACCCCCCTCGTCCTCTGGACCCTCGGCACAATGACCCAGGCTTTTACCACCCCCACCCTCCACAGAGAGGCCCCCTGCGCCAGGACGTGCCCCCCTCACCCCCTGTGCCCCTCCGAGGTGCCCGGTATGACACCATGAACCGTGGAGGCTTCCGACACACTAGTCCAGAGCGCTTTGCCTACGCAGATGGACGCCATCCTGATCCAAGACAGAAGAACGCCATGACTGCAGCCGTTTAAGCACAGCATTCTGTATGCCGCCTGGTACGCAACATGTAAAGAACCACACAGCAGCACCGTGTTCATTATCTTTTCAGTGTTGTTTATGTGCTTGACCTGTAGTTCACTCTGCCTTATCCTGAGTGACTTGCTGCCCAAGGCcacatctttaaaaaatgcGATAATACATTCCTGTCTTCCTGCCAAGTGAGGATTAATGGAGCTACACTCAAGAGCTCCTCTTTTTCTCCAGATCTGTGACTTGACCACAAAGGGAGGGTGGATGTGTATGAGAATAGATGCGTCAACTTCCAAGTCAAGCGAGATTCCCATGGTACTATGCCTGAGTGAGCCGAGGCTTGCATGCTGCTCCACGTGACAGAAGTTTAATCCCATTCTGCTTTGGTATTCATCAGCTCGGTCTAAAGAGTGTGCAGTGAACTTGTTTTCAATGCACAGAGTGCTATATGTTAGTGCTATATTTGTGTTAACCCCTTAATCTCCCAAATTATTAATTTCTTTGTTAATCTAAatgcatattattcagtaactaaaaCGAAACTAATATAGAAGGCATACGGATAAAAGGatgaggaatgtaagtctggaccCACAGAGGGGTTCTGGGATTTTAAGGGGTTAGAGCACACCTACAGTCCTGTCATTGGATGAGTCTATTAACTGTCACGCTGTGGCCCTCTGCCTTTacactttaaatcattttctttctgcatGTTGCCTTTACAAAGCCACTCTGCAACATTTACATTatcatcatttacattattactATCCATAACCACACTGTTCATATGCAGCTATTAAAGGAGACACCTATGAATAACATCATTTAGAGCCACTGACACTGAAAAGAGCATTTCTTATACCTTAAAAggctttttaatgaaattttacaaGTGAAGGTACTCTCTTCTATCTGTTCTGACTGTTGATGAGTTTGTATTTTATGTCTGCTTGAGTGaagtcttattaaaaaaaaattggaagaTTAAGAAAGTGGATGTGTTTGTCATGAGAGGAAAGAAGGATTCACCACATCGGAaggatgagaggatgatggAGTTGTTTCTCCACGCGCTTCTCGCAGCAAGCGGCAgctttctgttattatttttttccgtTATCATCATACTTGCACATAAATCCTTCACAAGTGTGGTTGCTTCACACTCCTAGTAGTTGCACACTTTGAATGTATAAATGACACAGTGGACATTTAGAGAGCAGATAATGGACAAATTGAATTCTGATAGCTTCATCATACACGTTTCAAATATATTTCCATAGCTTGGTATTAAGATGTCTGtaataaacaaaccaaatgttaattctgaacacataatttttttttactaacctCTTTTATAACACTACtttattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102117 lncRNA downstream 42770 20483169 ~ 20509623 (-) True G85978
TU102080 lncRNA downstream 156664 20394471 ~ 20395729 (-) False abcb6b
TU102081 lncRNA downstream 156664 20394824 ~ 20395729 (-) False abcb6b
TU101871 lncRNA downstream 543239 20007273 ~ 20009154 (-) True G85779
TU101870 lncRNA downstream 545371 20003056 ~ 20007022 (-) True G85778
XR_003404847.2 lncRNA upstream 140527 20965900 ~ 20976142 (-) False LOC113547596
XR_003404846.2 lncRNA upstream 140527 20965900 ~ 20976142 (-) False LOC113547596
XR_003404838.2 lncRNA upstream 142533 20967906 ~ 20976155 (-) False LOC113547596
XR_003404845.2 lncRNA upstream 142533 20967906 ~ 20976142 (-) False LOC113547596
XR_003404837.2 lncRNA upstream 142533 20967906 ~ 20976142 (-) False LOC113547596
XM_026910183.2 mRNA downstream 27621 20456013 ~ 20524772 (-) True nrp2b
XM_026910176.2 mRNA downstream 27623 20453330 ~ 20524770 (-) False nrp2b
XM_026912788.2 mRNA downstream 129149 20395067 ~ 20423244 (-) True abcb6b
XM_026913183.2 mRNA downstream 169627 20370841 ~ 20382766 (-) False ttll4
XM_026910709.2 mRNA upstream 58411 20883784 ~ 20908539 (-) True fn1a
XM_026913223.2 mRNA upstream 108145 20933518 ~ 20937574 (-) True LOC113526297
XM_034304794.1 mRNA upstream 108145 20933518 ~ 20937345 (-) False LOC113526297
XM_026947480.2 mRNA upstream 112619 20937992 ~ 20960443 (-) True cfap65
XM_026947492.2 mRNA upstream 112619 20937992 ~ 20960299 (-) False cfap65
TU101958 other downstream 314778 20226728 ~ 20237615 (-) True G85848
TU101560 other downstream 978930 19568751 ~ 19573463 (-) False steap3
TU101475 other downstream 1064654 19481120 ~ 19487739 (-) True grb14
TU99754 other downstream 3512550 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 4331527 16219964 ~ 16220866 (-) True G83554
XR_004578271.1 other upstream 310673 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 310673 21136046 ~ 21144621 (-) True phgdh
TU102877 other upstream 474514 21299887 ~ 21305100 (-) False dhrs9
TU102903 other upstream 632362 21457735 ~ 21459330 (-) False LOC117597354
TU102904 other upstream 632362 21457735 ~ 21459330 (-) False LOC117597354

Expression Profile