RNA id: AMCG00003581


Basic Information

Item Value
RNA id AMCG00003581
length 2358
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00003581
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10506558 ~ 10532085 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGTGCTGAACACAGTCATCAGGCACTGCTCCCCACGGTTCTTCTTTCTCGCCCTACCTGGCTTCACCATGCTGGTGGGCGACTTCATCACAGCTGCCGCCCGGGTCCTCAGCACCGAGGTGCTGGAGGCCCCTCGGATCGAAGCACAGACTGTTCTCGGATCTTTAGTGTGCTTTCCCAGCCTTTACCAACAGATGCCCTTACTGCAGACAGTTCCAGGAACCTCTGATATCATCGTAGGGAACGAGGACATTAAGGACTATTTGATCAACATATTACTGAAGATTGCAAGGAATGAGCCCAGTGAGGGTGCAAGTCTTGGTGTCTGGATCTGTGAAGAACTAGTGCAGCAATCCAATCACCCGCAGGTTAAAGATGCAATAAACGTCATTGGGGTAACACTGAAGTTTTCCAATAAAGCGGTGGCCCACGTAGCCTGTGATGTGTTCCAGCTTCTGATCTGTCACTGGCAAAACCTACAGAGATACGAATCCTCTCTTCCAAAGAAAATCACTGAAatTTTTGTGGCCACAATAGCATTCCTTCTGCCGAGTGCGGAACATTCTACCATGGAAGCTGACAAAAAGCTAATGGTATCACTGCTCCTCTGCCTGCTGGATTGGTGCATAGCAATACCTCTGAACACACTGCTGGAGCCTATTACCATGCCTGTGCTCGAAGATCCTTCCTCACAAAAAGCCCCTCTGTTGGACTATATTTACAGAGTGCTGCACTGTTGCGTTTATGGGTCTAACCTCCACACCCAGCAAAGCCATTATCTTCTCAGTCTAGCTGACCTGTCGGCTACAGACTACGACCCTTTCCTGGCTCTGGGAAACGTCAAAAACTCAGAGCCACTGCAGTCTCACTCCACGGTGGATTTTGGCAACCTGCTCACGGTGGCGGAGGagAAAAGGCGAAGGAATATGGAACTGATTCCTCTGACTGCTCGCATGATCATGACCCACCTGGTGAACCACTTGGGCCACCATCCTCTCAGTGGAGGTCCTGCTGTCCTTCACAGTCTCATCAGCGAGAACCACGACAACCATTATGTGGAGTCCTCCGAGCTGTCCTCCGAAGTCTTCAAGAGCCCCAACCTGCAGCTCTTTGTGTTCAACGACAGCACTCTTGTTTCCTATCTGCAGATCCCGGCGGAAAGGACTGGAACTGGTGAGCCACCGATGGCTTCTTCGGATGTCCGGGTCATCGTGAGGGACATCTCAGGGAAGTACTCTTGGGATGGTAATGTTCTGTATAAGCCTTTAGATGGACATGTCTCCAGTCATGACGGCAACCACAAAACCACAATGCATTTTGAGAGTCCCTGTAGGGGAGACCAAGTGAACTCATCTGGTTGGGATTCTCTTGACACTGAAGAAGGGCGAGATGTGTTGGACGAGCTCCTGGAGAGTCTTGGACACAGCAGTCCTGAATGCCTCCCGCAGCCCCAGCTGAAGCTCAATGTTCCGGCTCCTTCACCGTTCGGTATGAACTTAGACCAAGAAAATGCCATTATTGAGACCATCTTAAAGCAGACCATCCAAGAGGAGGAACATGTTAAGAGATGGAATAAGGACTTCAGCATGAAAGTAGCTAGTCAGGAAGAACCAACTCATCAAGAGCCCAAAGCTCCTTTCTATTTCTGCCGGCTGCTGTTGAACGACCTGGGGATGAATTCTTGGGATCGAAGgaaaAGTTTTCATCTGCTGAAGAAGAACTCCAAGCTCTTAAGAGAACTTAAAAACTTGGATTCAAGGCAGTGCAGAGAAACCCACAAGATTGCTGTTTTTTATATCGGCGACGGGCAGGAAGATAAATGCTCCATTTTGTCAAACACAGAAGGCAGCCAGGCATATGAGGATTTTGTCTCTGGACTTGGCTGGGAgGTGGATCTGGCCACGCACTGCGGCTTCATGGGCGGCCTGCAGAGGAACGGCAGCACGGGCCACACCGCCCCTTACTATGCTACCTCTACTGTGGAGGTCATCTTCCACGTGTCCACGAGGATGCCCTCCGACTCGGATGACTCTCTGACAAAAAAGCTTCGTCACCTGGGAAATGATGAGGTTCACATCGTCTGGTCTGAGCACACGAGAGACTATCGCAAGGGCATTATACCCACAGATTTCGGGGACgtgttaattattgtttatcCAATGAAGAATCACATGTTCTTCATCCAGATCATGAAGAAACCACAGGTCCCTTTCTTCGGTCCTCTGTTTGATGGAGCCATTGTAACGGGGACCCTGTTGCCAAGTTTAGTGCGTGCCACTTGTATCAATGCCAGCCGAGCTGTGAAATCCCGCCTGACACTCTACCAGAGCTTGTATCCTTTTTCCACATACAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056 lncRNA upstream 48793 10431664 ~ 10457765 (+) True G1747
TU2011 lncRNA upstream 268297 10236856 ~ 10238261 (+) True G1706
TU1863 lncRNA upstream 803080 9700557 ~ 9703478 (+) True G1574
TU1701 lncRNA upstream 1399794 9100618 ~ 9106764 (+) False AMCG00003544
TU1677 lncRNA upstream 1486340 9009297 ~ 9020218 (+) False G1430
TU2211 lncRNA downstream 518066 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 695874 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 798954 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA downstream 835938 11368023 ~ 11403029 (+) True G1902
TU2326 lncRNA downstream 930253 11462338 ~ 11482931 (+) False AMCG00003604
AMCG00003580 mRNA upstream 10638 10475837 ~ 10495920 (+) True AMCG00003580
AMCG00003576 mRNA upstream 274887 10230121 ~ 10231671 (+) True AMCG00003576
AMCG00003575 mRNA upstream 324598 10179342 ~ 10181960 (+) True AMCG00003575
AMCG00003571 mRNA upstream 611570 9892778 ~ 9894988 (+) True AMCG00003571
AMCG00003568 mRNA upstream 630715 9866100 ~ 9875843 (+) True AMCG00003568
AMCG00003583 mRNA downstream 85472 10617557 ~ 10623372 (+) True AMCG00003583
AMCG00003590 mRNA downstream 97488 10629573 ~ 10631480 (+) True AMCG00003590
AMCG00003585 mRNA downstream 104403 10636488 ~ 10657573 (+) True AMCG00003585
AMCG00003591 mRNA downstream 493124 11025209 ~ 11048576 (+) True AMCG00003591
AMCG00003594 mRNA downstream 552078 11084163 ~ 11098960 (+) True AMCG00003594
TU1883 other upstream 725656 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 1243090 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 1854154 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 4011653 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 958100 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 1041646 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 2505352 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 2622975 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 3886431 14418516 ~ 14419732 (+) True G2440

Expression Profile