RNA id: TU12488


Basic Information

Item Value
RNA id TU12488
length 1095
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G10034
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56129442 ~ 56130558 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaatattaaaatatttactaaatttttgaaaaatgtaagtcAATTAAACATGTAGATgacagtcagacacacagtgaaacacacatacaaagagGCAGGAATGGATAGACAGGCAATAAATAAAGCTCAGAGTCCAGTTGGAGTTTAAACAGACAGTCTCTTTTAATGGCATCAGTAAAACAATCTCCCCAACTGTCCCCACCCTCGCAAAccgtgatttatttattaatcatcatgtaggaattataattattgttattacccAGGTAtatttctttgtctttcttgtTGCAGAGtttatttggaaacatttgtctgtttttcaatgCAAGGGTTAGAGGAAGGAGGCGTGGCTAGCGGCAGCCGGTGGGATCTGGTTGGCCGAGGCAGGCGGTGATGTCAGAGAAGCGGCAGCGAATCAGGCAGAGGGATTTGGTTTGGTTTAGGGAGAAGGGAAAATGGGGAAAAGGATATAGTGGATAGTCTgagagaatgtgtgtgcatttgtgtgtgtgagagagagagagagagatagatagagagatcaAACTTAAATCTTATAGTGTATTGAAAACCTAAACAGACTGGTTAATTCAATTGTATTCTCTTTCAGAATTTTCAGTCTATATTAACCCCCCCACTCTTCATCTGTGAATCAAAGCTGTGGTGTAACAAGAGTATTAACCCCCTCTCTGATCTGTCTATATTAAACCCTCTTTCTCTTGTTATCCAGGTCTCAGCAACTGTTTCTACAGTGTAGTAACCAATTAACCCCCCTCCTGCTCCCTTCTCACCGAGACGTGCGAGTTTGTTGTGCATTTCAACGACAACCACCTCTACCTCTCTCCCTGTCCAAGAAGTGTATGAacccctctcctcccccccgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtacAGTGTATGaacccctctcctcctcctcctcctccccctctgccctttcctctcctctcttacTCGGCTACTCTCCTGTAGAAGTACAGGTATCCGAGGTCTTTGGGGGGTTTCTCAGAGGCACACACCTTCTGGTCATTGAAAATCAcccatctgagagagagagacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12474 lncRNA downstream 20357 56106713 ~ 56109085 (-) True AMCG00004665
TU12446 lncRNA downstream 60580 56066549 ~ 56068862 (-) True G10007
TU12143 lncRNA downstream 93493 56033498 ~ 56035949 (-) True G9794
TU12137 lncRNA downstream 121404 56006051 ~ 56008038 (-) True AMCG00004660
TU12085 lncRNA downstream 231380 55897856 ~ 55898062 (-) True G9751
TU12516 lncRNA upstream 216315 56346873 ~ 56352140 (-) False AMCG00004672
TU12521 lncRNA upstream 223370 56353928 ~ 56354406 (-) True G10061
TU12522 lncRNA upstream 223370 56353928 ~ 56354406 (-) False G10061
TU12528 lncRNA upstream 339964 56470522 ~ 56471426 (-) True G10067
TU12530 lncRNA upstream 359010 56489568 ~ 56491763 (-) True G10068
AMCG00004664 mRNA downstream 13518 56113405 ~ 56115924 (-) True AMCG00004664
AMCG00004665 mRNA downstream 20443 56107754 ~ 56108999 (-) False AMCG00004665
AMCG00004663 mRNA downstream 33051 56093109 ~ 56096391 (-) True AMCG00004663
AMCG00004660 mRNA downstream 120576 56007280 ~ 56008866 (-) False AMCG00004660
AMCG00004652 mRNA downstream 235367 55889982 ~ 55894075 (-) True AMCG00004652
AMCG00004662 mRNA upstream 16929 56147487 ~ 56162331 (-) True AMCG00004662
AMCG00004671 mRNA upstream 54659 56185217 ~ 56212864 (-) True AMCG00004671
AMCG00004672 mRNA upstream 153436 56283994 ~ 56384870 (-) True AMCG00004672
AMCG00004674 mRNA upstream 270903 56401461 ~ 56409291 (-) True AMCG00004674
AMCG00004677 mRNA upstream 280427 56410985 ~ 56414424 (-) True AMCG00004677
TU12067 other downstream 293265 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 578217 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 585889 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 709384 55367585 ~ 55420058 (-) True G9604
TU12437 other upstream 349782 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 482469 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 555179 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 617233 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 641944 56772502 ~ 56775440 (-) True G10079

Expression Profile