RNA id: TU61586


Basic Information

Item Value
RNA id TU61586
length 2058
lncRNA type sense_over
GC content 0.45
exon number 3
gene id AMCG00008473
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2062556 ~ 2075649 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTTACCTGCGTAGCGGGGGCTGGAAGGCAGGAGGACAATAATGTTTCGTGCTGTGCTTGGGTTTCTTTTCATAAACGAGACTTCTTAACCCTTTCTTTTCCAGACGAGCCTGTTTTAAAGGATCCGCATGTTGAGCATGTGTTAGTTAAACATGGTGTGGAGGACGAATACCTGACCTGCAGCGCCAGCGGTAACCCCGCCCCGAGATACGAGTGGAAATTCCCCCCCGGGCTTCCCAATGACCAACAACCCCAGTCTGAGGAAAGGGGGACACAGCTGCACCTGTCTCCCGTCTTCCCTGGAGAATATGTGTGTAATGCTACGAACAGCTATGGCACAGCGTCCAAGACATTCGTGGTCAGCGTGGAGGAAGGTCGGAGTAGGACCACATTTTGGGCAATACTTGGGTCTGGGATTGCCGTGACAGTTGTGCTAGTCGTTGGCTACCTAATCCATCGCAGGGCTGGTGAGAACTCTATAATCTAAAGCTGCGGAGCAGGGCAGCAAAACCCTGAGAGAAGATGGACGTTTCCCCTCTCTGCTGCGCATGATGGATAACTGCTTTGTGTGATGAGTGTCTGGCTGAAAATGCATGGCTTTGAGCTGGGGAGCTCGTCAGACTGCAAggtggggggtggtggttgGTTTCCTAGCTCAAATAGCTGATGTTGGTATCCAGGTCtgttcctgtgtttgtgtgtttgttagttagttgttgttgtttttctcctctgactgAAACACTGTCAGGAGATATCCTAGTCTGCCTGATCTCCAcgctgcatttctttcccttctcGACTCTCCCCACTCTAACCTCCTCCCCGGTGCTGAAGTCCACGGCTGGCATCTTGTGCCAGACAACCAGAGACAAATAACCAATCGACTCCAGGGCCCCATTCGTCGTACctggtttaattaattcaggCTAACCAGACGTTAGCCAGATTCAGTTAATCCGATGATTTAATTCGGGTATCTCCGTTCCTCAAAGTCGAATAGAGGCTAAACTTGTCTCGTTAACTGGATCACTACTTAAGAAATAATTTCACACGCATCCAATTTAAATCGGCACGCGTGTAGTAATGGAATGTAACATGGACTGAGTTTGCTGCAGCAGAACGGTTAGATCTCTATTGTATTGTCATATTTTGccattgttctttttaaaatattatactttaGTATTATGTTGTACTAATTAATCTGTCTGATATAAATTGTTTATTCGCCTTTAGccaaattaacagaaaattatCCCATCATATCGACCTATGAGATGAACACTttgaacacattaaaaaaatgaagcaatGATTTCTGACAAATAAGATTATTTCCTTCACCTTTCTCAAATCTCTGACACAATGCACAGTCTCTGAACATTCATTAGTCGTGGACATCATTGAATAACTGAGTCAAGGATGATGTGCAGTATTATCCAAAATCTGATGCCCTACTGTCTAGCACTGGCATTGTATAATTGTCGTTAAAATTGTCATTCGCAGCTGTACATTAATGCTGTGAtttcctgttcacaaaatctgccTCATTTGGTCCTGAGGTGCCTTGATGTGGATCTGACTCTACAGCACCGATGACTTTGTGGATCTCTGCATAATGTTGCCATTTCAGAGGGGAGCAGCTTTACGATTAAGGATGTGTTGCTGCAGTAACTCACTCAGTGTGACTTGAAGTTTCTTCGAGGAACAGGAAAAGCCTGACTTCTGTCACGTTAAACACAAACTCGGTTAGCCAGCTACTAGGAACGGGGCCCAGATCCTCTGCAATTAGATTAATTGTGCTTAGGGGGGGAAAATAAAGCAGATTGAGGTGGAGACTCgatggagggaggaggaggttTAACATCTTCCATAGGGGGTGCAGGCAATTCCACTCCTCGAGGCCGGGCGTCCCGGGGGTTTACAGGTGCCTTTCAAAACATGACAGATTAACgcttagaaaaacaaaacaaaaaaataactggtGATTTGGGCCTAATATTGACTTCAGGGAAGCAATTGAGATCCACGGTGGCATGAAAACCCCAANNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61609 lncRNA upstream 157638 1908823 ~ 1910419 (+) True G49294
TU61564 lncRNA upstream 211801 1799861 ~ 1856256 (+) True G49261
TU61576 lncRNA upstream 219319 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA upstream 229053 1838186 ~ 1839004 (+) True G49271
TU61567 lncRNA upstream 262030 1803825 ~ 1806027 (+) True G49264
TU61648 lncRNA downstream 87670 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 136780 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 369536 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 736525 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 810182 2885831 ~ 2886138 (+) True G49582
AMCG00008472 mRNA upstream 21120 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008468 mRNA upstream 173830 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008460 mRNA upstream 178290 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008458 mRNA upstream 187095 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008461 mRNA upstream 266299 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008475 mRNA downstream 12831 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008476 mRNA downstream 58197 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008478 mRNA downstream 180808 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008479 mRNA downstream 201142 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008484 mRNA downstream 319415 2395064 ~ 2402598 (+) True AMCG00008484
TU61614 other upstream 131555 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 743788 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 1099474 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 1188544 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1479611 587280 ~ 588446 (+) True G48846
TU61588 other downstream 16312 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 52066 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 133834 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 690230 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 811117 2886766 ~ 2888896 (+) True G49583

Expression Profile