RNA id: TU97830


Basic Information

Item Value
RNA id TU97830
length 751
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00010169
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17282646 ~ 17295515 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGCAGGAGCGGCCGCCATGATTGTTGTCCTTCCTCCAGCCTCTCAGGAACTTTCCGGAGCTGGACGCTGGAGAAGCCCGTCTGCATGTCTTCACCCCCGGCCCCGCAGCACCCGGCCCAGTCCCTGAATGCAGaCTAATAGGTATGCCAAAGGAAAAATATGATCCCCCAGATCCTCGGAGATTATATACCATCATGTCAGCTGAGGAGGCGGCCAATGGAAAGAAGTCACACTGGGCAGAATTAGAAATCTCTGAACACACTTAAAAGACAAGTATTACAACTAaggccaacaacaacaacaacaacaacaacagcaacaacaaaattgtTTTGGGCAACCACAGTCTTATCAAATTACCCCCGACCATATGTGTCACACAACAGAGCCACCTGCCTCTGTATTCCCTCAGTGTTTAAATTTAGCTTTTGAGAATGACATGAACACCCCAGCTGAACTGTTTTGTTATAAGAAAGTCTCCTTCTCCAATCTCAAATTTTTccagatttgtttcttttttctttttttcttcatgttttgtttaagtGACAAATGAATCAAGTACATAACCCGACATTTTTTCATAAAGTCGCATATTTTTCAGATTTGGATActgaatttcaaataaactaatgtaactgaaaatgtttgtcAGTCTCTTCATTTTGTCAATGAAAGTTTAATCCTAATCGCCTTTGTGAAATTTAAACCATGATAGGAGAAGCTAATCATATGCACTTGATTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97764 lncRNA downstream 102262 17188019 ~ 17188849 (-) True G78365
TU97597 lncRNA downstream 1054323 16232406 ~ 16236788 (-) True G78226
TU97592 lncRNA downstream 1077178 16209319 ~ 16213933 (-) True AMCG00010142
TU97549 lncRNA downstream 1258729 16032089 ~ 16032382 (-) True G78190
TU97501 lncRNA downstream 1500115 15788763 ~ 15790996 (-) True G78144
TU97836 lncRNA upstream 1927 17297442 ~ 17298204 (-) True G78422
TU97846 lncRNA upstream 9465 17304980 ~ 17305651 (-) True G78428
TU97847 lncRNA upstream 10862 17306377 ~ 17307001 (-) True G78429
TU97848 lncRNA upstream 12335 17307850 ~ 17308266 (-) True G78430
TU97849 lncRNA upstream 13195 17308710 ~ 17308916 (-) True G78431
AMCG00010159 mRNA downstream 77827 17194002 ~ 17213284 (-) True AMCG00010159
AMCG00010157 mRNA downstream 104173 17168595 ~ 17186938 (-) True AMCG00010157
AMCG00010156 mRNA downstream 123957 17152905 ~ 17167154 (-) True AMCG00010156
AMCG00010158 mRNA downstream 142362 17125229 ~ 17148749 (-) True AMCG00010158
AMCG00010155 mRNA downstream 181065 17054873 ~ 17110046 (-) True AMCG00010155
AMCG00010172 mRNA upstream 47763 17343278 ~ 17343902 (-) True AMCG00010172
AMCG00010171 mRNA upstream 49751 17345266 ~ 17345562 (-) True AMCG00010171
AMCG00010170 mRNA upstream 57638 17353153 ~ 17353449 (-) True AMCG00010170
AMCG00010179 mRNA upstream 84673 17380188 ~ 17388056 (-) True AMCG00010179
AMCG00010178 mRNA upstream 99622 17395137 ~ 17403507 (-) True AMCG00010178
TU96773 other downstream 5561946 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 10228290 7057805 ~ 7062821 (-) True G76762
TU95819 other downstream 10354043 6936718 ~ 6937068 (-) True G76752
TU95738 other downstream 10622277 6666606 ~ 6668834 (-) False G76684
TU95471 other downstream 11390127 5894675 ~ 5900984 (-) True G76463
TU98065 other upstream 545477 17840992 ~ 17844389 (-) False AMCG00010188
TU98067 other upstream 557352 17852867 ~ 17855730 (-) False AMCG00010190
TU98072 other upstream 649720 17945235 ~ 17945761 (-) True G78610
TU98705 other upstream 3635656 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 3780426 21075941 ~ 21081825 (-) False AMCG00010247

Expression Profile