RNA id: TU99331


Basic Information

Item Value
RNA id TU99331
length 3396
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G79648
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23461762 ~ 23466211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTGTTCGCACATTGagcaactttatttttattttgacaatatataGCTTGAGGTTTCTAACTAGTTAAATATAAAGATACCTTGTTATAACCCAgtcatatatacaaatacatacaaaacaggTCAGATAatggagctttcaaaacaatgtatatttacaggttttatttaaaaaaaaaatgtatatctgggATAAGTCTCATATGGATTGCAGAGGAAATATAGTGCAGCAGAGTACATTTCAAGACAAtcgaacaaaactaaaaatcaaaaCCAATAATACTGTATGCAACAGTGACAGTGCAGTAGTGTGACACCTGGCTTCAAACCAGCCACTGCCAAGCAGGTTTCTACCAGTCTTTAAAAGCTTCAGAGATGTGAAACTTATACACTggtgaattaaacaaattattgaaCAAAATTAAGGTCAAGCATGAAAATATATTCATGCAAAGCTTGAGGTGTAAAATACAAGTTTATATTACAGTTTTACCACTCAAATCGCGTTTTGCAGatgttacatttagtttttaaaacacCTTCATCTTGAATAGACGCAGAAGTGGTCCTAAACAGGCATAACAAAAGTCAGTGTCAAACATGCAGACATTCCCACAGAagccctcagctgtgctcatcTTATTCTTGTGATTTCATACTCAAATGCACCTATAAGTCACAATAATCACTCAACATTTACATCAGGGGTGTCAGATCCCTCTCCAAATACAGATGCATACAgctttaaacatttcaaataataccAAGAACACCTAAATACTACTGAATATACTCTACAAATCTAGCTTTTAAACCAATATTAAACCAAACCTTCACCAAACATTCTATAAACATTGCTGCTATGCATTTATTGCAAGGATTGTTCccattttaaaggaaagaaCATTCATGTCTTGAAATGTCTCTTCACAAgaaagtatacattttacttaGAACACTTAATACAATCCTAAAAATGTCCTTTACTTctccaaatacaaaatgataaatTAGTTAGTTTGAAATGGATCAGTCAGAAATTATTTCCTCAAAAGAATAGATGAAACCTAATGCCATCATTAATTAGTATAgtgccaaaacatttttatttatcttcttttGTATGTTCGGTCTGTCTTTTAGCACACAAGGAGAGGCCcgtttaatgtttaatgcatgTAGGTTTCTTCAGAATTTAAAAGGTAATTAAAAACTATGAATGAACAACCAGAAGCAAAACCATATCAACATGTTTTAAAGAGGAACTAGCAGAGTTcctaaaataattgttttatgcatttttataggTTGCCaataatgaataagtaaggTGTTTGGGAGGTGCGGCAGGGAAGACAAATACGGTGTGTCGGTTGTTTTTCCCCTACTGCGTTTCctctatccaggaagttatgacatgGCATTCAGAAACACTGAAATCGCAAATGTCGGCTTTTGACATATCCCATTATTTCGGGAGTCccaaatatcacattatttaaacttacttttatttaagtggCACGAAATATTCCCATCCTGAAACGTATCAAATGAAAACAGTGCAAAACCACAACACAAATctctaaagcaaaataaacaacatacaCAGAATTCATTGACGGCTTGAAAAATGTTACGAGACAaaatcttttaattaatttaactgtagTCTTATAAAATATGCTGgatttcaaaaatgaaaacaagggTCAGTATAAAAGGGGAGgagtaataaacaaaacaaacaaaaaacacactagGCTTCCAGCCTTGCCAAAATTACTTAACCTTTCTGACTAAGCCAAATTTGAAAGTGCAGCAACATcaagtgggggagggggaataTTTCAGTGCAAACCATTTCAGTCTTTTACAGAGACTAAAAACTATTATGTGTATAAGGTCCCAACACACTCGCCAATTGCTTACCTTTTCTTTCACACATCTCAGAATGCACAGATTGTATATTCGCAAAAAGGCCACAAGGTACATGTCAAACTGAGGTTGATACTTTCAGACTGATAGTTGGAGGTATCTCCATTCAAGCTGGAGATGACTCCTGCTGGGCCAGCTAGGATTGTACTTGATCTCTGTCTTCATATACTGAACATGTTACgacaattaacaaaatgattgAGTTAAAACCTTTTGGtcaaaacattacagtaaactgatgttttttcccctgtacAGCTTTAAAATTACTGCAGTAAAATAGGTTTGTGAAacactaatttgattacatgtACAGCTCCCAAATGGCAAAAAGCTATCAGGAATTAACCAATGGATATGAATCTATTAAGTGAGACTAGTTCTTCCTTTACTTCAGACCTGGATTGTGtgctgtataaaaaaaaactaatccaGACCTATATAATGAAGTTCAGTTATGAATCTTGAGTCTATGAAAATATGCAAAGgcatgaattaaataatttcttacTGGCATTGAGATTATCCAGCAGCAAATAATTGAATATCCTTTTAAGTCTAATATTTCACATGCAATGAAATGACCTACTTCAAAAGTTCTGAAGCAaaaggggagaagaaaaaataaatggtagcATGGAACAAAATTACAACTTGAAATATTAACAGGAAAAAGGCCCacatttttgcaattaaaatggtaGGCAAGTTAGTACATATGtcagaaaacagaacaaactgcattttgaaataaaataagcttaATATATGTACGGGTTTATAGGTTTGCAACATACAGCACAACAACCATTGAAACCATTGAAAACATTGGATATGCATTAGTTCTTGGTCCTGGACAGCCCTGATCCAGTTAGTTTTACACATCACCCTAAATTAGCACAGACTGAGGAAATAGTCAGGGGTTCCAAATAAGCTCTAAGTCAGGATTTCCCATTAGGTATGAACAGATGTGCCATGAAAtttggggagaaaaacaaaaactataattTGTTTCAATTACATATGTTCCTACAAGTATTGAATGACTGCATCAAGCACTTGGGGGGGTGTGTCAGCATTTTAAGCCAAGTAGGTGTGCCTTCAGGTGGAACTCTGCTTTAATGGAATTAACTAAAAACACCCCTAGCTCTGAATTCAATTTTTGCAAGCCTTCAGAAATTGATGACTTAAGGGTTACTTATAAAACTTGCTAGACTAGGATTCTGTAGGACCAGGGATGGAGACAACCAAAGTGCATAGTCAGCACTACCAGAATAGAGGGGTGTCAAAAGTCAGATTCAAGAGTCCAGGGGGAGATGGTGGCGAATGGGAGGTTGGAGAAATCACATACAGTCCACCACATTGCTGGATCCCTGGCCTACATCACGTATCTGGCTGACGTGAGAGGCACACACGGCGACCCCAGCCCCAGCTCGGCAATGCGACACCGACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99266 lncRNA downstream 130247 23327498 ~ 23331515 (-) True G79595
TU99265 lncRNA downstream 132793 23327498 ~ 23328969 (-) False G79595
TU99264 lncRNA downstream 134401 23326988 ~ 23327361 (-) True G79594
TU99207 lncRNA downstream 314693 23141385 ~ 23147069 (-) True G79548
TU99206 lncRNA downstream 316707 23141385 ~ 23145055 (-) False G79548
TU99563 lncRNA upstream 841693 24307904 ~ 24310189 (-) True G79837
TU99612 lncRNA upstream 1134921 24601132 ~ 24650632 (-) True G79872
TU99626 lncRNA upstream 1257624 24723835 ~ 24759263 (-) True G79881
TU99633 lncRNA upstream 1334458 24800669 ~ 24804163 (-) True G79882
TU99716 lncRNA upstream 2049853 25516064 ~ 25524499 (-) False AMCG00010343
AMCG00010304 mRNA downstream 18247 23427758 ~ 23443515 (-) True AMCG00010304
AMCG00010308 mRNA downstream 45242 23399351 ~ 23416520 (-) True AMCG00010308
AMCG00010303 mRNA downstream 76657 23378360 ~ 23385105 (-) True AMCG00010303
AMCG00010295 mRNA downstream 231765 23213280 ~ 23229997 (-) True AMCG00010295
AMCG00010296 mRNA downstream 260594 23175774 ~ 23201168 (-) True AMCG00010296
AMCG00010309 mRNA upstream 45816 23512027 ~ 23549379 (-) True AMCG00010309
AMCG00010306 mRNA upstream 119350 23585561 ~ 23589652 (-) True AMCG00010306
AMCG00010307 mRNA upstream 124813 23591024 ~ 23597743 (-) True AMCG00010307
AMCG00010302 mRNA upstream 162440 23628651 ~ 23642630 (-) True AMCG00010302
AMCG00010305 mRNA upstream 181180 23647391 ~ 23666530 (-) True AMCG00010305
TU99273 other downstream 96815 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 375777 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 1479788 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 2379937 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 2520369 20931171 ~ 20941393 (-) True G79147
TU99963 other upstream 2906531 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 8488173 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 9529239 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 12248740 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 13211486 36677697 ~ 36683818 (-) True AMCG00010602

Expression Profile