RNA id: TU99716


Basic Information

Item Value
RNA id TU99716
length 2616
lncRNA type sense_over
GC content 0.37
exon number 3
gene id AMCG00010343
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 25516064 ~ 25556080 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAAGAATATGAGAAGACAAAATCCCAGAGAGATCAAGAAGAGAAGCTGATTGTTTCCGCTTGGTACAACATGGGTATGGCCCTTCAGAAGAAAGCTGCAGAAGACAGGCTGGCCAGCACGGGCTCTGGACAGTCCTTTTTGGCCCGGCAGAGACAAGCTACGAGCACGAGAAGGTCATATCCTGGTCACGTCCAGCCAGCCACAGCCAGcGATGTGATTGCATGACCTTCAGCATGGTTGAGGGTTGCATGATGTGCAGTTGCATGGCTTTTTGAGTTGAGCCTTGCGTAACCCATCGACTAACCCTGCTCATAGGGAGAGCTCTCAAAGTGAGGAGATCATTGCCTGCTCCAATCATGGAAGCTTGCCTGTGCTACTAAAACTGCATTCCTGCCCAGACTCAATACAGAGCAAGGGCCAGTGCTCTTTGTGGTGGGGGTTTCACTGGGCACAGGTCCTCCAGAGTAAATGCATGGCTTTGCCTCTTACTATGTTTCCTGCAGATCAGTTCTTATCAGGGCTATTAAGGTTGTCTTCTCTCTGGACTGCTTTTGCACTTTGTTCAGAAATATGTAATGGCAGAAACAGTGTTTTAGGGAGaaatggggagggggaggcatttactttatttcttgAGATATTCCTCAACCAGAGGTATTCCTCTCGAATGACTCATATTTTATATCTGGCAAGACATTTTGTAGCTTCAAAAATGGGCTACGTACTGTTGTAAACTCTTTTAACCATATGCAAGATTGTCAAgttgcattttcaataaaaaaagtgtttttttattttattttattttcccaggggatttggttttatttttttcaaaggcAATATGGTTGCAACAcgcaatgtaatgttttatttcatcatttgtttttaaatgagtttgCCCTGTAATTACTGCCTACATGATCACATGGATCCCTGAAATGTCCCATTTTGTTGCCTAGTTACCAGGTCTTTTATTGAATGACTTACTTCCCACTCTATTCTTTCCTTTCTCgttcatatttatttgcattttcgattttaaaacagtattatcTTCTGTAATACCCATCATGCccatcattctttttttttttctttttattattttcccgaATACATCATAATCATACTTGTACCATTCTTCTAAAAGAGACTCTCTTTGAGATAAAAGggtagtgttttgtttgtgttttggagCTGCTGCATAAGTGTAAGGCTTTTGCACAACTATGCCTTTAATGTAGTGTattgatttctgttttgaattaaCCCATGCAGTATTGACCTACAGATGCATTTAGAAGATTATATTctattttatagattttattttaggttatcCTATTTACTTACCGGTCAGCACAGTTTTCTTTTAACTGGTAGACTTTACTGAGGGGAGCCAATTCATAATGGAAAATGTCCTACTTGGCAGCACATagctttgtttgcatttcaactgctaaaagtaaatattacagCCAATAAAGGGTCATCGTGAGTTAAAACATTCAGGGATTCGTAACATTTCAGCTTATTTAGCATGTATTGCGTCGATTCTGATGTTTACTTCCCTGTTCTTTAAAATAGCACAGAATCCAACTTTCCATCATCTGCTGCAGGTAGGCCAAAGAGACGAAAAAAAGTCAACAGCTGTCTTCTCTCTCATTATAGATATAAACCAAGAATTCAGCTCTCTTACCTCATGTTATATTGTTTGGTGAGATGTTAGTGGCATGTAAACATTAAAGCAGAACGATTACTATAATCGCAATACCACAATTTCTGTGCTGCACCTTGACATGAAGCATGAAGCTCCCTGTTCCAAACCAAAGGGAGCAAAAACACATCAGTGATTTTATAAAAGTCTGtctgtaaatatttagaaatcAGTCTAGTaatgaaatgtttccaaatgtGTCTCCATCTTTGATATGTGCAGGAAGGGTCAGATTTAAAGTTTTTCGTTTGTGTTTTCGTGAATGTGGGTAACCTATAAATATAGGTAGGAGATATAGACTAAAACTgcctgttaaaatgtatatgtatgtgtttatacatacacacacgtgaTCAAACCACATATTTATTGCACCTGATCTTTTGGCAGGTCAGTCTTACAATACTTCTAAAGGTACACAAAGGTGGGTTTTATTGAAAGCCACTTAGTAGATCAAATCctgaaaaaaaatgctaatataaaagGTTACCACTTAACCCGTCCATAATAGGAGTATCTGATTGTGTGCTTCTCTCCTGTATAGAACCAAAACCCTCTAACAAAGTCTGTCAGACAAAGGCATACAAAACTCTGCTTTAGTTAATCTGTTTTGGTTGCTGTTCTTAGAAGTGGGAGAtttcttgttttacatttcttgaaagtagcaagctttgttttttttttttctctgcctgCCAAGTTTTATATTgcttgtatacatatatgtacatatgtgaGAAACATTTTGACAAGGAGTTGGGtcatatagaaatgtatatggTTGAATATAGGGATTTCGCAGTATCTTTCCATTAGAAATctgttaataatacaatatgctTCCTATGCTGCAAAAATGTACAGTTGTTAAACAAGTTGTAAATAAAGCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99633 lncRNA downstream 711901 24800669 ~ 24804163 (-) True G79882
TU99626 lncRNA downstream 756801 24723835 ~ 24759263 (-) True G79881
TU99612 lncRNA downstream 865432 24601132 ~ 24650632 (-) True G79872
TU99563 lncRNA downstream 1205875 24307904 ~ 24310189 (-) True G79837
TU99330 lncRNA downstream 2049853 23461762 ~ 23466211 (-) True G79648
TU99727 lncRNA upstream 199978 25724477 ~ 25724677 (-) True G79963
TU99751 lncRNA upstream 319844 25844343 ~ 25886490 (-) True G79984
TU99870 lncRNA upstream 494464 26018963 ~ 26021958 (-) True G80080
TU99890 lncRNA upstream 544804 26069303 ~ 26069625 (-) True G80094
TU99891 lncRNA upstream 554301 26078800 ~ 26080513 (-) True G80095
AMCG00010342 mRNA downstream 303565 25201333 ~ 25212499 (-) True AMCG00010342
AMCG00010341 mRNA downstream 350088 25158070 ~ 25165976 (-) True AMCG00010341
AMCG00010339 mRNA downstream 395721 25118889 ~ 25120343 (-) True AMCG00010339
AMCG00010340 mRNA downstream 454160 25018454 ~ 25061904 (-) True AMCG00010340
AMCG00010335 mRNA downstream 665288 24833662 ~ 24850776 (-) True AMCG00010335
AMCG00010348 mRNA upstream 367499 25891998 ~ 25911171 (-) True AMCG00010348
AMCG00010349 mRNA upstream 390415 25914914 ~ 25940115 (-) True AMCG00010349
AMCG00010350 mRNA upstream 557481 26081980 ~ 26118160 (-) True AMCG00010350
AMCG00010351 mRNA upstream 672542 26197041 ~ 26202850 (-) True AMCG00010351
AMCG00010352 mRNA upstream 679983 26204482 ~ 26219813 (-) True AMCG00010352
TU99273 other downstream 2151117 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 2430079 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 3534090 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 4434239 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 4574671 20931171 ~ 20941393 (-) True G79147
TU99963 other upstream 848243 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 6429885 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 7470951 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 10190452 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 11153198 36677697 ~ 36683818 (-) True AMCG00010602

Expression Profile