RNA id: TU99626


Basic Information

Item Value
RNA id TU99626
length 662
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G79881
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24723835 ~ 24759263 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatatatatacagacatgtttatatatatacacatatgtatgtacatatgtatatgtatgttacCATATGGCAGATTTAAATTGATTTCATtatcttaaagaaaaacattttgagcagttttttaatgttccttatgtatttgaagaaaaacagtaTGCTTTGAATATTGATATGCCTGAAAGTGTGAGCACTAATGATATTTTGCCAGGTTGGACTAAACGTACGTCAATGCATCATTAGCATGTGCAGCCTGAGAATGAGCTTTGACAAagtcagtgttatttttatctGTAGATCTGATCAACGTATCCCTTCACAAGTTCAGTTCATTTCTACTGTTCCCTACAGTGAGCTGATCCTACCACAGATTTGAAAGACTGCACCGTCAACTCATAAAGCAGTTTTGCTTAGTTTGATTAACTTGATTGAAGGATATATGTTTTAGTGGCAAAGCATCTTTTttgttgggtttgtttttgtttgaggCTGTGTACTGCATTTCAGGATGCATTTAGTCTGGTGTGGGTTTTGCTAGGTCATGACATGTATGGataatgtttttgttcattttgtgtgttttttttcctctctcccccaaTGTTACTCACTCAaggtatttctattttttttaatcaagcaaataaagttttaaaaaccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99612 lncRNA downstream 73203 24601132 ~ 24650632 (-) True G79872
TU99563 lncRNA downstream 413646 24307904 ~ 24310189 (-) True G79837
TU99330 lncRNA downstream 1257624 23461762 ~ 23466211 (-) True G79648
TU99331 lncRNA downstream 1257624 23461762 ~ 23466211 (-) False G79648
TU99266 lncRNA downstream 1392320 23327498 ~ 23331515 (-) True G79595
TU99633 lncRNA upstream 41406 24800669 ~ 24804163 (-) True G79882
TU99716 lncRNA upstream 756801 25516064 ~ 25524499 (-) False AMCG00010343
TU99727 lncRNA upstream 965214 25724477 ~ 25724677 (-) True G79963
TU99751 lncRNA upstream 1085080 25844343 ~ 25886490 (-) True G79984
TU99870 lncRNA upstream 1259700 26018963 ~ 26021958 (-) True G80080
AMCG00010327 mRNA downstream 416974 24295147 ~ 24306861 (-) True AMCG00010327
AMCG00010326 mRNA downstream 433174 24267232 ~ 24290661 (-) True AMCG00010326
AMCG00010316 mRNA downstream 852079 23861894 ~ 23871756 (-) True AMCG00010316
AMCG00010317 mRNA downstream 870445 23842700 ~ 23853390 (-) True AMCG00010317
AMCG00010318 mRNA downstream 882567 23838986 ~ 23841268 (-) True AMCG00010318
AMCG00010336 mRNA upstream 59579 24818842 ~ 24825545 (-) True AMCG00010336
AMCG00010337 mRNA upstream 68245 24827508 ~ 24832544 (-) True AMCG00010337
AMCG00010335 mRNA upstream 74399 24833662 ~ 24850776 (-) True AMCG00010335
AMCG00010340 mRNA upstream 259191 25018454 ~ 25061904 (-) True AMCG00010340
AMCG00010339 mRNA upstream 359626 25118889 ~ 25120343 (-) True AMCG00010339
TU99273 other downstream 1358888 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 1637850 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 2741861 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 3642010 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 3782442 20931171 ~ 20941393 (-) True G79147
TU99963 other upstream 1613479 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 7195121 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 8236187 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 10955688 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 11918434 36677697 ~ 36683818 (-) True AMCG00010602

Expression Profile