RNA id: AMCG00010316


Basic Information

Item Value
RNA id AMCG00010316
length 3309
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00010316
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23861894 ~ 23871756 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGCTCGGCGCAGCAGCAGTCCGGCTTCCGCACATGTTGCAGTCGGCCCACACGTGTGCGGTGATCTAGCTGTGCGAGCACCCACCGACAGATGTATAGATCTAGACAAAGCGAATGTTTATATTTAGATTGTATAAAAAGAGCAGTTCGCGATATTATGGGTGTTAATATTTAGTAACGACTCGTGGTCTGGTTTCACGGAGCATGTCAGGACGCGTCAAGGATTATTCTTAAAGCCTGATAAGCCATGGACTGCAAATTCCCACCGATTCTCTTCCCGCAGTTTTTTAACACCGGACCTCCAGGCAAGAAGCCCGATGTTCTCCCAGTTGCAGGAGGATGGGGCGTCTACGGACAGTTAGTTGGAGTCGACAGCACTCAAGAGGGTCCTGGCCAAGGAGGCAGTGTGACCTTTGAACCCCAGCACAAAGTAAAGGGGGAGAGATGGAAAGCATTGGAACCCATTCCAGCTCCTCTGCTGCCCCCTAATTCAGattgcaAGGTTTCCTCACCAACTGACACCAAAGCATCAGACTTCCCGATACATaTGCAGAATTTCTACCTTGATAACTCTCTGGATGCCTTTGGTGCAATGAGCCATATTCTGGAAGAGCACTTCTATTTTGGTAATGGTGAGTTACAGGGCCATTTAAGACAAAATACCAAAAGCATGAAGACAATGAGAggatttttaaatgactttaaTTACCATAAgTGCCCCATGACGTTTTTCCGTTGGAAACCACGCTATTACAGCTACCTGTTTGGAGATTTGATTTACGACATCCCCCCTGCGCTGCTAGGAGAGCTCCTGCATGAGGAACTGATGCTGCAGGGCCACAGGGAGCAGTTCAACGAGGTGTCCACTGGGGGTGCTCTCGGGTACATACCGTTTGCAGAGACCAGTCACTCTCAAGAAGGTTGCTTGATTTATCCCAGACACGCTGCCCTGAACCAGCTCCATTTCCGCAAGATGGTGCTCGATTTCGAGGATGTCGGTGCCCCCAGGCTGAGTGTTGAGGACCAGTCTGTGAAGATGAATCTGAATGGAACAGTCCGTCAAATCAGCACAGGGAATATGCAAGAAAATGTTTTTGTGGGGGTGCGCTCAGATTATCACTGTAGCGTTTGGAGAATCAACAGCAACATGAAGCCGTCTTCTCTTGAGGTCATTCAGACCGATCAGCTTGCTACGTGCATCAGTGTGAGTCCTCATCTCCCAGGAGAGCTCCTGGTTGCCAGTGAGAGTGGTGCTGCGTATCTGTGGACTGTGGGCAAAGGGCTGCACAAGTTCCGCACTGAGACAGAGAACCTGTACTTCAATGGGCGGTCAGCATGGCGTTGGTGTGATTACACAGCCCACCCCCGGGTGATGATGTATGCTGACAGGACGGGGGTGGACCTCACAGACACCAGGTCTCCGGAAAATGCAAGCCACACTCTGTTTTACATTGGGAAGACCGCAGAATGCAAAAAGGGCGAGAGGGTAATCCTGCCCAAATATCTAAGAGATGTGAATTCCTACCACTACCTCATTACAACACAGTATTCCGCTTATATTTTGGATGAGCGTTTTCCTGGTCTGCCTGTGATGAAGTGGGAACACATGATGGATTTCCCCCCAATGTTTTCCCAAGTCATAGCAGGAGCTTCATGGGACAGGAGTAACAAAGTGCTGCTGGGTTCTCAGCGATCTGGACAGCTGATGATGTTGCAGTATTCTGGTGGTAGTCAAGCAGCCTGCCAGTCTCTGGGACCTCCTCACAAGCTGTCCAGCCCTTCTGACTGTCTGAGACACTTGCCTGTGCAGGTCCCTCACCGTCGAGAGAGAGCCGCGGAGAGACTGGATTCGCCCAGCGCAGGTTTGACGGCTCTCTACCATAACCAAGGCACGGAGTCGCTGTGTGTGCTCCAGTTGTCCGAGGCAGGAGATATCTTCTACCAGATACTGAGGCCTGAATCGGGAAACCTGGAAAATGAAGAAACATCAAGGAATATAGACCCCACTGATGAAGAGGAGGAATCCATAGATTCAACTCGGGAAACAACCCTGATTCAGCACGATGAACAAGAAACCTTGGAAAACAATATGACTGATACACAGAGTGAAACTGAAGATGAAGTAGTCCCGTCTTACCAAATTGAAACGGTGATTAATGACCTAGAGGAGCAGGACCTTGATTCAGAGTCCGACTCGCAAGACACTGTTGGCCAGTCCTCTTCTTTGAATCAAGGCATCTCAACCAGGCTTGCAAGAAGCCAAACTAACTCGGTATCACCTAGCAAGAAGCTGCTGGCCAGGTGGAAACATTGGCTGTCAGTCTTTCTTCAAAAGCCACCGTTGTCCCAAAAAATGACTAGATCTCACTGGGGCTTTAGAACCAGAAGGATCATGTCTTATAGTGCTTTCAGGAAGAGCACATCAGAGTTGACCAAATATGATGACGTGAAAGCAGAGTTGAAAGAATCGATGAAAAAAGAGGAGGCATTCGTCGGTATCTACACACGACCGCCGTCCATGGAAGTTGTGCAGATCCCAGATCCAGTGGACCCTTCGGAGTGGGGTGATGACCTGAGCAAGCGTCTCACAGCGTCTTGGGGAGGCAACTGGCAGACCTGGTGGGAGGATAAGCTGGGGCTGAACCATGACCAGAAGGTCGAGGCTCTGCGTAGGAAAAGGAGGCAGCAGAAACGGGCACGCCGGCGAATGTGCCTCTCGGGAAGCTTCGCCTCTTCGGTCAGCTATCAGTCAGACATGGATGAGCTTTCAGGTTGGTCCTCTGCGACTAGCAATTTTGGGGACAGTCAAGGCTGGGAGACATCATGCTCTGAGACAGGTGGACCTGCTACAACAGATTCGTCCACCCAGGATATAATCTCTGGATCTTGCAGGACTAATGAGAACAGTCCGGAACGATCTGTATGTAGCCAAGAGAATGAGCTGGCACTTGAAAATGCTACTGTTGCCTCCCAGGATGCCATTCTTTCCAATCGGGACACCGTTGTTACAGGATTTCCTCCGGTAAACAGGAGTTTGTTGTCTGTAGATAATGCAGACTGGTCAGATGCCACAAGATCTGTTATTTCACCGAGACCCTTGGAGTCTTTGCTCCCACAGAGCATTCTAAAGCCTCCCACTTCACTTGCTACAGAGGAGACACAGGATGCAGTGGAGGATGAGGGCTTCTTCCCTTTGGCTTCCTCTTCCCAAACCAGCACAGCTTTTTCACAGAAATCACGCACAGTGCCTTCCTCTCAAGGTTATCTGCGGTCTTCACAGCCAAAGAAGTCACGCATGGGCTTCTGA

Function

GO: NA

KEGG:

id description
K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99330 lncRNA downstream 395683 23461762 ~ 23466211 (-) True G79648
TU99331 lncRNA downstream 395683 23461762 ~ 23466211 (-) False G79648
TU99266 lncRNA downstream 530379 23327498 ~ 23331515 (-) True G79595
TU99265 lncRNA downstream 532925 23327498 ~ 23328969 (-) False G79595
TU99264 lncRNA downstream 534533 23326988 ~ 23327361 (-) True G79594
TU99563 lncRNA upstream 436148 24307904 ~ 24310189 (-) True G79837
TU99612 lncRNA upstream 729376 24601132 ~ 24650632 (-) True G79872
TU99626 lncRNA upstream 852079 24723835 ~ 24759263 (-) True G79881
TU99633 lncRNA upstream 928913 24800669 ~ 24804163 (-) True G79882
TU99716 lncRNA upstream 1644308 25516064 ~ 25524499 (-) False AMCG00010343
AMCG00010317 mRNA downstream 8504 23842700 ~ 23853390 (-) True AMCG00010317
AMCG00010318 mRNA downstream 20626 23838986 ~ 23841268 (-) True AMCG00010318
AMCG00010311 mRNA downstream 100798 23734022 ~ 23761096 (-) True AMCG00010311
AMCG00010312 mRNA downstream 138989 23714037 ~ 23722905 (-) True AMCG00010312
AMCG00010305 mRNA downstream 195364 23647391 ~ 23666530 (-) True AMCG00010305
AMCG00010326 mRNA upstream 395476 24267232 ~ 24290661 (-) True AMCG00010326
AMCG00010327 mRNA upstream 423391 24295147 ~ 24306861 (-) True AMCG00010327
AMCG00010334 mRNA upstream 852815 24724571 ~ 24742655 (-) True AMCG00010334
AMCG00010336 mRNA upstream 947086 24818842 ~ 24825545 (-) True AMCG00010336
AMCG00010337 mRNA upstream 955752 24827508 ~ 24832544 (-) True AMCG00010337
TU99273 other downstream 496947 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 775909 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 1879920 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 2780069 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 2920501 20931171 ~ 20941393 (-) True G79147
TU99963 other upstream 2500986 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 8082628 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 9123694 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 11843195 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 12805941 36677697 ~ 36683818 (-) True AMCG00010602

Expression Profile