RNA id: AMCG00010326


Basic Information

Item Value
RNA id AMCG00010326
length 4804
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00010326
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24267232 ~ 24290661 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCATACAAACGTGCGGGGGGTGGGGCGTTTCATTCAATTGATCCTGCCCACCCATAATGTGTACTTCTGTCAGTGTTACTAGAGAGCTGGTGTGACACTGTCTGAGAAGCATAATTAATACTGAATTTAGGACCTCAGCAGACATTTACAGAACAGATATACAACGACAACCAGCTAAAGAGGAACTAAATTCCTGCAGTGGGTTGAACAAGGAGGGACgcatttaataaaacacaacatggcAGTCTTGGGAAGTGCAAGTCGACTATTATTCCAATATGTCAGATGCAACAGTGGCAGGAGTTTGTGTGCCAGTAAGCAGTACAGATGGCAGTCGACTGCCTCTGCCGCCGCAGCAATGAAACTATCTCCGCAGGCTCAGGAAAACAGGAATCCCAAAACTGGAATTCTGATGCTCAACATGGGGGGGCCCGAGAAACTAGATGATGTCCATGATTTTCTGTTTCGGCTTTTCATGGATAGGGATTTGATGACGCTTCCAGTACAAAATAAACTTGCCCCGTTCATTGCCAAGAGACGCACACCAAAGATTCAGGAGCAGTACAGCAGAATTGGTGGTGGTTCTCCTATAAGGATGTGGACCACTCTGCAGGGGGAAGGCATGGTCAAACTGCTGGATGAGATTTCTCCAGAGACAGCCCCTCATAAGTTTTACATTGGGTTCCGGTACGTCCATCCACTGACCGAAGAAGCCATTGAAGAGATGGAGAAGGATGGAGTAGAGAGAGCAATAGCTTTCACTCAGTACCCTCAGTATAGCTGCTCTACCACAGGCAGCAGTCTGAACGCAATCTACCGGTACTATAGCAGCAGAGGAGGAAAGTCAAAGATGAGCTGGAGTGTCATTGACAGGTGGCCCACTCACCCTCTCCTCATAGAGtgtTTTGCAGAACATATCCTAAAGGAACTGGAAAAATTCCCTGTGGAGAAGAGGGACGATGTAGTCATTCTCTTCTCTGCACATTCACTGCCAATGTCTGTGGTAAATCGGGGGGACCCCTACCCGCAGGAAGTGGGCGCAACGGTACAGAGGGTCATGGAGAGACTGAAGCACTGTAATCCCTACCGCTTGGTGTGGCAGTCTAAGGTGGGCCCCATGCCTTGGCTAGGTCCTCAAACAGACGAGACCATTAAAGGACTGTGTCACAGGGGGAAAAAGAACATCTTGTTGGTCCCCATTGCCTTCACCAGCGACCACATTGAGACCCTGCATGAGCTGGATATCGAATACTCCCAGGTGCTAGGAGAGGAGTGCGGTGTGGAAAACATCAAGAGAGCAGAGTCCCTGAATGGAAACCCTCTCTTCTTTAAGGCACTGGCGGACTTGGTTCACTCTCACTTGCAGTCCAAAGAGGCCTGCTCCAGACAGCTGACCTTGCGTTGCCCTTTGTGTGTCAACCCAGTGTGTGGACAGACGAAAGAGTTTTTTGCCAGCCAGAAACAATAACTTTATTCTTTGATCTGTGAAGGTagaaagaagaatgaaaaaagaaaacaactataAATGTGTACACcgctatttaaaaaaagaaggaaaaaaaaaagcattaaacatGCAACACACCAGTTTGCCTTTCCTCAGCCATCAGATTTCCCCAAGTCTTATTATACCATCTTCTTGCAGttcaacagcaacaataatcaAAACCCAACTATATTTAAGCATAGAAACGAAGCAGAAAATCCCATAGGACAAAAATAACCAAGGAAacaaggggggaaaaagcaCCTCAAGTCATGGGCTTCCTAATTAAGCAGAAAAGCTGCAAGTGAAATAGCAAAACTCGTGCAAGATTTCTACTAATTTACAATTCTCTGATAAAGGGACCCTCAGCATCAACACTCTCATTCAGAAGTCCCCAAGTACAGTCCTAATCAGATTAATCTTGGATAGAGCCATTATCAAAACAATGGTTGTGTGAAGATAGTCTTTTTCTGGTAGATTCCCCCACAACAAACACATCTCACAGAGGACTACCGAAACAAGAGGAGTGCAGCGTGCAGGACATTATCAtcctaattattatttcatttgtcCCCTGATACGCACACAAGTGTACGACAAAGTTTTTCATGGAATTAAAACTCCAGTTTACAGAACAAAACCAGATTTTCTTTAATCAGAAAATAGGTTTACTTTACACAGAATGTTTCCAGGTGCTtacatttgtaatcattttttaatttaattttgtgaatcAACATGTCTGTTGAGCCAGGACTTGTCTCACTTCAGGGGGACACTGTGAGTCAAACCTCTGGCAACTCTTCCTGCATTGACTTCAAAATCAACTCCAATGTCCACCCAAAGCTGGTTGAAGTCTTACGCTGTCATGTACAGTAACATTGcactaaaataatttaaataaaaagtgttacatattttattttatttactattttaacCTCTTTACAGCTGTGCCTTTCTTTGTAGTTAGTGATTTTCCCCTTATACAGAACTCCATTACCTAAAATTACCCTTTCAGAACAGGGTATCGAGACCCATTATGCAGTCCAGCAGTATGAGTATTCTCCACAGAcattttgctcatctttatGGAAATAACTATTGTGACTTCTAGAATTAACACtcagatgttattttttatttttttattttgtacttctgCTAATTTTGTAATGTCATTTCTCATGCATAATGTGCTCAAGCCAAACTGAGAACGTCACTGAAGCACTCCCATGTAAAATGAAAGGTGCATCAAGATCGGTTTTGtgcaaaaatgaatattttcaCAGTTGTGCAGAGCTTTCCTGGGCtatttgttaaattaaccattttaatttcttcatacTCTTGTGCAGCCTTGACTAAACTGTGCTTagacaacaaaaatattgtacagGCGGACAGGGAGACCTTGTTGATCAGCTTCTGTTTTGCATCAAAACTCGTGACaggagaaaaaggaaagtgCAGTGTCTACCTTGTCTGTATACTGATGAATTAATCTCTCACTGATGAAGCTTAGAAAAGGCCTGCTGTGTTTACTTCAAGTCAATTAGGAGTTGCCATTAAATCTTTCAATCCCCACATTGAAATTCATAGGATGGAAAGAGAGCAGTGTGTTGGAGAAGGAGTCAAGATATGGTTTGAGAGCAGGGTTAACTATGTTCCTTGGAGAACCAGAATCTTGCATATAATTCATCAATTTCTAAACATCTGGAACAAATAGTTATATCTATTTCAGCCTAGCAACtgactaattaatttataaaggcCTCAGCTGAACCaaaaaaactaatgaaaacAGCTCTGCGTACTTAGCTGTGGTTGAAACTAcagatgttttaatgaaaatgtgtttgtcatttgtaatacagtacaagtaaaaactgaaaagaataaGGTAAGTGGTAAAAGTACAAACCCTCATCAGATTCATCGTGTGTCGTTAGTGATCAGAAATGTAAACCTGTCTGTTATGAGCTGACACACTGATAATCTTATTTAGAAACACCAGCTgtcaattttgtatttggtcttttttttccctatgATAGAACAAAAATGCCCAATTGGCAAACATGAGGATTTTTCATGTCTTCcttaagaacaaacaaatgaaatattttggTTGTTCATTGTATCGAGTAAATGTATCACTTTTTCAgatgctttcttctttttcttcttctgttttttctttcccaacaCAAAAGCATCCACTGCGGTAGCTGTTGGTGATTAAGTTGGGTGAAATTGGTTGTCTCAGAACCAATAAGTCCTGCCTGTGAAGCGTGCTATAGCCAAGAGGTGGTCAGTCTGTAACAGGGAGACTGGGAAGTGAAAGATGCTGACCTGTGAGCCACTGTACCTCCTGGTAATTGAAAAAGCCAGGGAGGCTGTTTTCTGGCACCGTGTGACCCCTAATTGAAAGCACTTCAATTGATTTCTCTACCTTGTGTGCTTGTGGAGAGAatgagggagaaaaagagagaagggaCGAATGACTAAGAACGAATGACCGAATCGAGAGAACGAAagaccaaaacacacacacagcgagaGAATGAGAAACCAGGCAATGAAGGAATGACAGGATGAAATTGTAAGTGAGCAGGAGGCAGGAGAGGGGGGGGTGGAAggattgaaaatgtgaaaacgaGAATAAAAGTTCAGCAGAAGGAAGAGACAAAGAAATGGAAGAAAGGGTCATCATTgcaaatataattgtttatatcACACTTGCTGTGTAAGAAAGGTGTAATCCCATcccactgtttaaaaaaaatcagatgtAATATAGTGCTAATGAATGGGTTCAAAACACTTCTTATCTGTAttgttaaaactgaaaaaagagaCTTAATTAAATGAGGACTTCCATTTTTGTCAGCTACTTTAATGTGTCCTGTAACAGCTGTCTGCACTCCTATGTATGTTTCGTGACTTTAGACTTGAACTTTTACAAACAAgctcaaaagaaaaagaaaactatgaGAATGTACCCTTTCTGTTAAGCTAGAAGCTGAAAACAGTAGCAAATCAACTTGGAACAGGTACTCCAGTAAAACTGAGTGATGGTGCACCTTTTCCAGCCACTAccttgctttgaatgtgtgcatTAACAAGACTTTCTCTGCTTACAAAGTCTCTGGTGTGAAGCTTTCATATCAGTCACCACTGGGAAGCGATTGCCATGcaagataaaacattttaaatcaaactgtACTAGATATATATAAAGTAGTGTACACTGTATGTGGATGCATCATgatgttaattattaatgtaataaatatttgactGCAGTTTGCAA

Function

GO:

id name namespace
GO:0006783 heme biosynthetic process biological_process
GO:0043249 erythrocyte maturation biological_process
GO:0004325 ferrochelatase activity molecular_function

KEGG:

id description
K01772 hemH, FECH; protoporphyrin/coproporphyrin ferrochelatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99330 lncRNA downstream 801021 23461762 ~ 23466211 (-) True G79648
TU99331 lncRNA downstream 801021 23461762 ~ 23466211 (-) False G79648
TU99266 lncRNA downstream 935717 23327498 ~ 23331515 (-) True G79595
TU99265 lncRNA downstream 938263 23327498 ~ 23328969 (-) False G79595
TU99264 lncRNA downstream 939871 23326988 ~ 23327361 (-) True G79594
TU99563 lncRNA upstream 17243 24307904 ~ 24310189 (-) True G79837
TU99612 lncRNA upstream 310471 24601132 ~ 24650632 (-) True G79872
TU99626 lncRNA upstream 433174 24723835 ~ 24759263 (-) True G79881
TU99633 lncRNA upstream 510008 24800669 ~ 24804163 (-) True G79882
TU99716 lncRNA upstream 1225403 25516064 ~ 25524499 (-) False AMCG00010343
AMCG00010316 mRNA downstream 395476 23861894 ~ 23871756 (-) True AMCG00010316
AMCG00010317 mRNA downstream 413842 23842700 ~ 23853390 (-) True AMCG00010317
AMCG00010318 mRNA downstream 425964 23838986 ~ 23841268 (-) True AMCG00010318
AMCG00010311 mRNA downstream 506136 23734022 ~ 23761096 (-) True AMCG00010311
AMCG00010312 mRNA downstream 544327 23714037 ~ 23722905 (-) True AMCG00010312
AMCG00010327 mRNA upstream 4486 24295147 ~ 24306861 (-) True AMCG00010327
AMCG00010334 mRNA upstream 433910 24724571 ~ 24742655 (-) True AMCG00010334
AMCG00010336 mRNA upstream 528181 24818842 ~ 24825545 (-) True AMCG00010336
AMCG00010337 mRNA upstream 536847 24827508 ~ 24832544 (-) True AMCG00010337
AMCG00010335 mRNA upstream 543001 24833662 ~ 24850776 (-) True AMCG00010335
TU99273 other downstream 902285 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 1181247 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 2285258 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 3185407 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 3325839 20931171 ~ 20941393 (-) True G79147
TU99963 other upstream 2082081 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 7663723 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 8704789 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 11424290 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 12387036 36677697 ~ 36683818 (-) True AMCG00010602

Expression Profile