RNA id: AMCG00010334


Basic Information

Item Value
RNA id AMCG00010334
length 3497
RNA type mRNA
GC content 0.38
exon number 6
gene id AMCG00010334
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 24724571 ~ 24742655 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGCCGCACTGTTCAGCACAGTCAGCACTATGACTGATGGGGACTATGATTATCTCATCAAGCTCCTTGCTCTTGGAGACTCTGGAGTTGGAAAGACCACATTCCTGTACAGATACACCGACAACAAGTTCAACCCCAAGTTCATCACCACAGTGGGAATTGACTTCAGGGAAAAGAGGGTGGTGTACAGTGCTTCAGGACCAAATGGTACGACTGGAAAAACCTTTAAAGTTCACCTGCAGCTCTGGGACACAGCAGGACAAGAAAGGTTTAGGAGCCTCACAACAGCCTTCTTCAGAGATGCAATGGGCTTTTTATTAATGTTCGATCTCACCAGCCAGCAGAGCTTCTTGAATGTGAGGAACTGGATGAGCCAGCTCCAAGCCAATGCATATTGTGAAAATCCAGACATAGTATTAGTTGGTAATAAAGCTGATTTATCAGATCAGAGAGAGGTGCAGGAAAAGCAAGCAAAAGAACTAGCTGAAAAATATGGGATACCTTACTTTGAGACAAGTGCGGCTACAGGTTCAGAGGTGGACAAGGCGGTCATCACACTCCTGGACTTGGTGATGAAGCGCATGGAACAATGTGTAGAAAAGCCCACGCAGGAGCCTGCCAATGGGGGGGGGTCTGGGAAACTGGAGCCTGAGCAGGCCCCCGAGAAGAAGTGTGCCTGTTAGACTGCCCGCCCAGCAGTCTCTCTGTAAAGAGGACAAACCAATACATGAATACGATAAAATAAGTCAGATTATATATGCACAGCTAGCCAAGCAGCTGTGTTAGACGGCCTTGTTGGGGTCAAGTTAGGCCTTCCTTGATTTCCCTGACAATTTGCTTGGGTATCTGATTGATTGTCACTACATTTGTTAGTATTTCTGATATCATATATACTGTCCTGTTAATGTAATAGTCCTGCACCCCCATGCTGCCCTCAGATTCCCCAGAGATCGTGTAGCCTTCAATCTTTCCAATATCACTGAGCTAGCCTTTTCACGTAACTTGTTGACTTTCcaaattctgtatttattaagtGTTTTCCTATGCAGCTGGAGTGTTTGAAATTGAGATGCTTAAATCCTTGTTTTCTGTCATTAAGGGTTGCTTTCCTCACCTTAGTTGTTCACTGCAGTAAGAGACTTGGATGAGGATTGGACCTGTGAAAACGTGTTGAAAGTCTGCCTGCCAAACGTTTAGGATTTTTATTTGCTGAGAAGTGTGTGTCAGGATTTCGTAATTAATGTTACCACACCTGAAATTAAGCCATGTTACTTGTATAACATTAGaacatacaaataatgcatATACAGTAATGTGCTGAAGGATTTCTCAGCTTGTTCAGACCTAAAATAACATGGTCCATCCCTCTGCAGTGTACACCACCATAAGAGCAGCCATTCAGATAAATAATTTGTTCTGGCTTTTCAGTCTGTTAACACATTCAATATGTGTGTTATTGAGGGTTTGCTTAAGGCCCCAGTTCCAGTGGTAGAAAGTAAGGCACTGTGAGATACCTaatcaatatttcaaaatgtaatttaaacatcagATGAGGTCAGATGATCACAGCCTTACATAGGTGGCCCTATTCTGGCTATTTGACAGGACAGTATACTCTAGgcaaaaattaaatgcaaatctaCCATTCCCAATGTTAGGCTAGTTTTATATTACTTAATGGCATAAGTCTTCATTTGTATTGTTCACTGAttttataacaatttaaaattattgaAGTTAAATCACATTTGTTGTTGCGATCTGTGAgccaaaattatatttatgtatgtatttttgcgGCCAATACAACATTAACTGCCTTTGCATGTGAGGCCTTGCCAGTTTAGGAATTTGAATATACACATCAAAGATACTGTGTATGATTCACCAGTATGAGCGTTTACACCTCGGTACTGCCTATATTTCCATTCCTGTAGTCTCTACATAATGTATAATTCCATTTTGTTCCTGGGTTGGTCTGTTTTAGAATTACTTTTAAAggttagatttttgttttgtttttagatattaaatgttaaaaggcaGGAAAAATAGAAAACGATGGTGATGGCAGTATTGAAAGTTGTAGCTGTGTTCATATGTTCAGTGATGTATTTCTTTCATTACAGTTTAAGATCTCATTATAAAATATCAACTTGTTCTTTCAGTGTATTGTGGAAACATGAGTTATCAGAGTTCAGTGACCAATTTTGAAAGGCAATAAGaatttggaaaaacaacaacttaaaaatgtaaatgcgtGTTGCAGATGTCTGAGAAAGAGATCTTGCACTGAAATGTATTCCTTTCAGTAAAATATTTGCTCTTCTGACTCACTATAGtacattgtattacattacaaaatacttttgtaGTGAAGACCAACATGTATTCCTGTCATACTTAAACAATATTCTGTTTTCTAGAAGTCAATAAAAGGGTGATTACAACAGTACATAACAATTGCTGTTCACAAGAGACTCCAAAACCTAATCCCTGTATGTGGGTTTATTATTACACTGGAGCGTTTAGTTAATTTCAACCAAACAATAAAATggcaacaaataaaaaaaagctttgaataGTATAAAAAGAATACACTTTGTTAATTTTGATATAGGTAACGTgcaactatttttaaatttgtgacCACTGTTCTACATTGGTTTACCAGTAGATATTATCCAAGAAACCCATTGGCTTAAGTGTCTTTTAAAGTGCATCttctttaaaattgaaagcCTCACTAGTTAGTTTAGTGATTCCACCCATCCACAGGATGATTTCAGCAACTTCTTGTTCACTAATTTAGGTGTGGGGCCacaatgtgtttgtatattaattGGGAAGAGGTGGAGGGAGGCATGCAAACAGGTGGAAATCCAACATCAGCCACCTTACAGCCACCAACCCTCCGTCGAAGGGGTGCCGTACGTAGTTAGTTCAGTTAGTCTCCTCAATGTGACAATCTCTAGACCAAATCGGCTAACTTTCTTTTAAAGAGCAAATTAAGCTGATGACCTTGTTCTGCCATTATCTGCTTtgagaaaattaaattttgagctcctgtaaacatttttataagtAAAGTATTCCCGAGTACTGCTGTACTGCAGAATCCCAAAGAACCAGTGTAGGAGCCCGTTTATTGTGCCCAGCAACTCAACTGGATAATTTCACGATCTTATCCTGAAATATCAGCTTTTTTGTggcggggtggggtggggtcCGGGGGATCAAAAATGTGACTTATGAAAAACTATGTACAATCTTTGTTTTATGTCAGCATTTGGACTTCATAGCCATTCTTAAAAGTTTACATTTGTCTGGAGGaattttctcttctctgttaTGTGCCTGTGATGCTATGTGACCAATAATATCCTGTAAAACCTTATTTGTAAAAGTTGTGAACTACtgaatatttttaatgcatcaaaatattaagtgaagcaaaaaaataaatatatatagatatatgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
K07886 RAB27B; Ras-related protein Rab-27B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99612 lncRNA downstream 73939 24601132 ~ 24650632 (-) True G79872
TU99563 lncRNA downstream 414382 24307904 ~ 24310189 (-) True G79837
TU99330 lncRNA downstream 1258360 23461762 ~ 23466211 (-) True G79648
TU99331 lncRNA downstream 1258360 23461762 ~ 23466211 (-) False G79648
TU99266 lncRNA downstream 1393056 23327498 ~ 23331515 (-) True G79595
TU99633 lncRNA upstream 58014 24800669 ~ 24804163 (-) True G79882
TU99716 lncRNA upstream 773409 25516064 ~ 25524499 (-) False AMCG00010343
TU99727 lncRNA upstream 981822 25724477 ~ 25724677 (-) True G79963
TU99751 lncRNA upstream 1101688 25844343 ~ 25886490 (-) True G79984
TU99870 lncRNA upstream 1276308 26018963 ~ 26021958 (-) True G80080
AMCG00010327 mRNA downstream 417710 24295147 ~ 24306861 (-) True AMCG00010327
AMCG00010326 mRNA downstream 433910 24267232 ~ 24290661 (-) True AMCG00010326
AMCG00010316 mRNA downstream 852815 23861894 ~ 23871756 (-) True AMCG00010316
AMCG00010317 mRNA downstream 871181 23842700 ~ 23853390 (-) True AMCG00010317
AMCG00010318 mRNA downstream 883303 23838986 ~ 23841268 (-) True AMCG00010318
AMCG00010336 mRNA upstream 76187 24818842 ~ 24825545 (-) True AMCG00010336
AMCG00010337 mRNA upstream 84853 24827508 ~ 24832544 (-) True AMCG00010337
AMCG00010335 mRNA upstream 91007 24833662 ~ 24850776 (-) True AMCG00010335
AMCG00010340 mRNA upstream 275799 25018454 ~ 25061904 (-) True AMCG00010340
AMCG00010339 mRNA upstream 376234 25118889 ~ 25120343 (-) True AMCG00010339
TU99273 other downstream 1359624 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 1638586 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 2742597 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 3642746 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 3783178 20931171 ~ 20941393 (-) True G79147
TU99963 other upstream 1630087 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 7211729 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 8252795 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 10972296 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 11935042 36677697 ~ 36683818 (-) True AMCG00010602

Expression Profile