RNA id: TU151048


Basic Information

Item Value
RNA id TU151048
length 566
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G102168
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 25466320 ~ 25502146 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTGAGAAGTCCATTTATTGTACTAAAAATGGCTGAATACAAAGTACATTCACAAGAACAGCACTTTCTGCTAGACTGTCTGCAGAGCCGACAGAATCTCTATTACTGGCTTAATGTAAGTAAATGACTCATGACATTAATCTAGCTTCCCCATCTACTGCTTTTGTAATCATTGTCTCAGACACACAGAGAAGTAAAATCCCATATGTGAtcataaaataagttttcacATTACGGACGTACTGTCAGGTGtaccatatatttatatatttatatatatttgataaatatcATTCAAAGCTAGTTACATATTTACACATGTTCCCCAAGCAGACACTCGGGAATGTCAATGTCTACAATATTCACATCAATACGTGTTCTCAGTTCAAAGGCAAACGTGTATTTGGTGTCTGTGTTATATTGTGGCACAGTCATTGGTGTGAGACGAAGACATCATTGCCTTcagagctagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaaaaaaaaaaaaaaacacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151043 lncRNA upstream 1198 25442974 ~ 25465122 (+) True G102164
TU151009 lncRNA upstream 321137 25090512 ~ 25145183 (+) False G102143
TU151022 lncRNA upstream 349561 25115870 ~ 25116759 (+) True G102148
TU150994 lncRNA upstream 407133 25057831 ~ 25059187 (+) False LOC122358267
TU150901 lncRNA upstream 887791 24578203 ~ 24578529 (+) True G102069
XR_006252536.1 lncRNA downstream 14196 25516342 ~ 25530371 (+) True LOC122357820
XR_006252469.1 lncRNA downstream 215247 25717393 ~ 25720928 (+) True LOC122357405
TU151092 lncRNA downstream 249633 25751779 ~ 25752136 (+) True G102209
TU151095 lncRNA downstream 255029 25757175 ~ 25757493 (+) True G102212
TU151191 lncRNA downstream 297059 25799205 ~ 25800191 (+) True G102284
XM_043256869.1 mRNA upstream 356753 25092111 ~ 25109567 (+) True csnk1a1
XM_043256871.1 mRNA upstream 356753 25092111 ~ 25109567 (+) False csnk1a1
XM_043256872.1 mRNA upstream 356753 25092112 ~ 25109567 (+) False csnk1a1
XM_043256870.1 mRNA upstream 361890 25092111 ~ 25104430 (+) False csnk1a1
XM_043257885.1 mRNA upstream 379761 25083848 ~ 25086559 (+) True sil1
XM_043257697.1 mRNA downstream 335645 25837791 ~ 25841644 (+) True LOC122357986
XM_043257682.1 mRNA downstream 387926 25890072 ~ 25897581 (+) True LOC122357974
XM_043257710.1 mRNA downstream 396970 25899116 ~ 25917595 (+) True xrcc1
XM_043257684.1 mRNA downstream 417120 25919266 ~ 25936250 (+) True drd2l
XM_043257687.1 mRNA downstream 434488 25936634 ~ 25944086 (+) True LOC122357978
unassigned_transcript_1961 other upstream 1238072 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 1249557 24216243 ~ 24216763 (+) True G102017
TU150815 other upstream 1376798 24086724 ~ 24089522 (+) True tmem35
unassigned_transcript_1960 other upstream 1414545 24051703 ~ 24051775 (+) True trnav-uac_6
XR_006252530.1 other upstream 3158869 22282292 ~ 22307451 (+) False gria2b
TU151254 other downstream 530833 26032979 ~ 26035638 (+) True G102332
TU151318 other downstream 666412 26168558 ~ 26171402 (+) False gnrhr3
XR_006252567.1 other downstream 872187 26374333 ~ 26383634 (+) False khdc4

Expression Profile