GENE ID: ENSDARG00000107526

Symbol Location Gene type Genome version Species
smkr1 4: 4232562 ~ 4233275 (+) protein_coding GRCz11 Danio rerio

MARKER



EXPRESSION

Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain Radial glia (cluster: 7)
 potential marker
 NA
PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Neuron (cluster: 15)
 potential marker
 NA
GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Epidermal cells (cluster: 15)
 potential marker
 NA
GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Immune cells (cluster: 20)
 potential marker
 NA
PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos Ionocyte progenitors (cluster: 6)
 potential marker
 NA
PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Mucous secreting cells (cluster: 24)
 potential marker
 NA
PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment Ependymal (cluster: 12)
 potential marker
 NA
PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae Support cells (cluster: 7)
 potential marker
 NA
PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Neuron (cluster: 3)
Ciliated olfactory sensory neuron (cluster: 5)
 potential marker
potential marker
 NA
NA
PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Ciliated olfactory sensory neuron (cluster: 1)
 potential marker
 NA
PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Ciliated olfactory sensory neuron (cluster: 1)
 potential marker
 NA
GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells Otic (cluster: 7)
 potential marker
 NA
PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish
PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled)
PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos
PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development
GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver
GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated
GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS
GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated
GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS
PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis
GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT) whole body baseline 10dpf, cd41:GFPlow-WT

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