GENE ID: ENSDARG00000105641

Symbol Location Gene type Genome version Species
si:ch211-98n17.5 7: 34256520 ~ 34265481 (-) protein_coding GRCz11 Danio rerio

MARKER



EXPRESSION

Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Cranial ganglion (cluster: 22)
 potential marker
 NA
GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Eye (cluster: 17)
 potential marker
 NA
GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Periderm cells (cluster: 16)
 potential marker
 NA
GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Periderm cells (cluster: 16)
 potential marker
 NA
GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 11)
 potential marker
 NA
GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled) Enveloping layer cells (cluster: 7)
 potential marker
 NA
GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos NCC ionocytes (cluster: 1)
 potential marker
 NA
PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells Otic (cluster: 10)
 potential marker
 NA
PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Periderm cells (cluster: 4)
 potential marker
 NA
PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 13)
 potential marker
 NA
PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 14)
 potential marker
 NA
GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Periderm cells (cluster: 17)
 potential marker
 NA
GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Periderm cells (cluster: 14)
 potential marker
 NA
GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Periderm cells (cluster: 17)
 potential marker
 NA
GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Periderm cells (cluster: 11)
 potential marker
 NA
GSE158142 (24hpf) head baseline 24hpf, untreatment Periderm cells (cluster: 8)
 potential marker
 NA
GSE158142 (2dpf) head baseline 2dpf, untreatment Eye (cluster: 15)
 potential marker
 NA
GSE158142 (3dpf) head baseline 3dpf, untreatment Periderm cells (cluster: 9)
 potential marker
 NA
GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS
PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae Support cells (cluster: 2)
Support cells (cluster: 7)
 potential marker
potential marker
 NA
NA
PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae Support cells (cluster: 4)
 potential marker
 NA
PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Neuronal progenitor (cluster: 4)
Endothelium (cluster: 7)
 potential marker
potential marker
 NA
NA
PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Endothelium (cluster: 3)
Endothelium (cluster: 7)
 potential marker
potential marker
 NA
NA
PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Endothelium (cluster: 4)
Endothelium (cluster: 7)
 potential marker
potential marker
 NA
NA
PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR) Gills (cluster: 13)
Thyrocytes (cluster: 7)
 potential marker
potential marker
 NA
NA
PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Thyrocytes (cluster: 12)
Gills (cluster: 8)
 potential marker
potential marker
 NA
NA
GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Periderm cells (cluster: 36)
 potential marker
 NA
GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
GSE151354 (wild type) cartilage baseline 21dpf, wild type
PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos
PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment
GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment
PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS
GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
GSE150498 (DSS treated) intestine disease 6dpf, DSS treated
GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC
GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet
PRJNA672101 (WT) retina baseline 5mpf, three retinas from WT zebrafsih
GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment
GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih
GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment
GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/-

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