GENE ID: ENSDARG00000009822

Symbol Location Gene type Genome version Species
her4.4 23: 21462021 ~ 21463788 (-) protein_coding GRCz11 Danio rerio

MARKER



EXPRESSION

Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Progenitors (cluster: 11)
Progenitors (cluster: 12)
Radial glia (cluster: 13)
Progenitors (cluster: 16)
Progenitors (cluster: 8)
 potential marker
potential marker
potential marker
potential marker
potential marker
 NA
NA
NA
NA
NA
PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain Radial glia (cluster: 3)
 potential marker
 NA
GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Glia (cluster: 7)
 potential marker
 NA
GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Glia (cluster: 8)
 potential marker
 NA
GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Eye (endothelial, progenitors) (cluster: 13)
Progenitors (cluster: 4)
Progenitors (cluster: 5)
Glia (cluster: 6)
 potential marker
potential marker
potential marker
potential marker
 NA
NA
NA
NA
GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
 potential marker
 NA
GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 5)
 potential marker
 NA
GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
 potential marker
 NA
PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 2)
 potential marker
 NA
PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 10)
Neuron (cluster: 3)
 potential marker
potential marker
 NA
NA
PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 2)
Neuroblast (cluster: 3)
Neuron (cluster: 7)
 potential marker
potential marker
potential marker
 NA
NA
NA
PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 1)
Neuroblast (cluster: 10)
Neuron (cluster: 4)
 potential marker
potential marker
potential marker
 NA
NA
NA
GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Hindbrain rhombomere (cluster: 1)
 potential marker
 NA
GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Progenitors (cluster: 3)
 potential marker
 NA
GSE158142 (3dpf) head baseline 3dpf, untreatment Glia (cluster: 8)
 potential marker
 NA
PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment Progenitors (cluster: 6)
 potential marker
 NA
GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated Stromal (cluster: 9)
 potential marker
 NA
GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Stromal (cluster: 12)
 potential marker
 NA
GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS Stromal (cluster: 13)
 potential marker
 NA
GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Prop1+ group (cluster: 11)
 potential marker
 NA
GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Retinal progenitors (cluster: 1)
Retinal progenitors (cluster: 3)
 potential marker
potential marker
 NA
NA
GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Retinal progenitors (cluster: 1)
 potential marker
 NA
GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Retinal progenitors (cluster: 1)
 potential marker
 NA
GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Retinal progenitors (cluster: 3)
Retinal progenitors (cluster: 6)
Retinal progenitors (cluster: 3)
Retinal progenitors (cluster: 6)
 potential marker
potential marker
potential marker
potential marker
 NA
NA
NA
NA
PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+
GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
GSE158142 (2dpf) head baseline 2dpf, untreatment
GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment
GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment
GSE158142 (24hpf) head baseline 24hpf, untreatment
GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment
GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment
PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver
GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated
GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA
GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days
GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet
PRJNA672101 (WT) retina baseline 5mpf, three retinas from WT zebrafsih
GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment
PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih
GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-

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