GENE ID: ENSDARG00000056729

Symbol Location Gene type Genome version Species
her4.2 23: 21469203 ~ 21471022 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000056729 (her4.2), yellow represents other genes.
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    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Mid,hind progenitors (neural plate) (cluster: 1)
    		 marker
    		 DOI:10.1016/j.neuron.2020.09.023
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment Progenitors (cluster: 6)
    		 marker
    		 DOI:10.1038/s41559-021-01580-3
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Progenitors (cluster: 11)
    Progenitors (cluster: 12)
    Radial glia (cluster: 13)
    Progenitors (cluster: 16)
    Progenitors (cluster: 8)
    		 potential marker
    potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain Radial glia (cluster: 3)
    		 potential marker
    		 NA
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Progenitors (cluster: 3)
    Glia (cluster: 7)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Progenitors (cluster: 3)
    		 potential marker
    		 NA
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Progenitors (cluster: 4)
    Progenitors (cluster: 5)
    Glia (cluster: 6)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
    		 potential marker
    		 NA
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 5)
    		 potential marker
    		 NA
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
    		 potential marker
    		 NA
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 2)
    		 potential marker
    		 NA
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 10)
    Neuron (cluster: 3)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 2)
    Neuroblast (cluster: 3)
    Neuron (cluster: 4)
    Neuron (cluster: 7)
    		 potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 1)
    Neuron (cluster: 4)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Hindbrain rhombomere (cluster: 1)
    		 potential marker
    		 NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Hindbrain rhombomere (cluster: 1)
    		 potential marker
    		 NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Cycling progenitors (cluster: 1)
    Cycling progenitors (cluster: 2)
    Comitted progenitors (cluster: 9)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Progenitors (cluster: 1)
    		 potential marker
    		 NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Progenitors (cluster: 3)
    		 potential marker
    		 NA
    GSE158142 (2dpf) head baseline 2dpf, untreatment
    GSE158142 (3dpf) head baseline 3dpf, untreatment Neuron (cluster: 3)
    		 potential marker
    		 NA
    PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Smooth muscle cells (cluster: 4)
    		 potential marker
    		 NA
    GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated Stromal (cluster: 9)
    		 potential marker
    		 NA
    GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Stromal (cluster: 12)
    		 potential marker
    		 NA
    GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS Stromal (cluster: 13)
    		 potential marker
    		 NA
    GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2 Prop1+ group (cluster: 9)
    		 potential marker
    		 NA
    GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Prop1+ group (cluster: 11)
    		 potential marker
    		 NA
    PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Smooth muscle cells (cluster: 10)
    		 potential marker
    		 NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Retinal progenitors (cluster: 1)
    		 potential marker
    		 NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Retinal progenitors (cluster: 1)
    		 potential marker
    		 NA
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Retinal progenitors (cluster: 1)
    Muller glia cells (cluster: 9)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment Retinal progenitors (cluster: 3)
    		 potential marker
    		 NA
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Retinal progenitors (cluster: 3)
    Retinal progenitors (cluster: 6)
    Retinal progenitors (cluster: 3)
    Retinal progenitors (cluster: 6)
    		 potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone Satellite glia (cluster: 16)
    		 potential marker
    		 NA
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
    PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
    PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
    PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
    PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury
    PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
    PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
    GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
    GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS
    GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl
    GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated
    GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
    GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
    PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
    GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
    PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
    GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days
    PRJNA672101 (WT) retina baseline 5mpf, three retinas from WT zebrafsih
    GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
    PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR)
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR)
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
    GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT

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