GENE ID: ENSDARG00000003469

Symbol Location Gene type Genome version Species
neurod4 23: 28343988 ~ 28347039 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000003469 (neurod4), yellow represents other genes.
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    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 3)
    Neuron (cluster: 7)
    		 marker
    marker
    		 DOI:10.1093/g3journal/jkac062
    DOI:10.1093/g3journal/jkac062
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 4)
    Neuron (cluster: 8)
    		 marker
    marker
    		 DOI:10.1093/g3journal/jkac062
    DOI:10.1093/g3journal/jkac062
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Neuron (cluster: 13)
    		 marker
    		 DOI:10.1016/j.neuron.2020.09.023
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Neuron (cluster: 11)
    		 marker
    		 DOI:10.1016/j.neuron.2020.09.023
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Bipolar cells (cluster: 5)
    		 marker
    		 DOI:10.1242/dev.185660
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 3)
    		 potential marker
    		 NA
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 3)
    		 potential marker
    		 NA
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 2)
    		 potential marker
    		 NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 10)
    Neuron (cluster: 14)
    Neuroblast (cluster: 2)
    Neuron (cluster: 4)
    		 potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Neuron (cluster: 9)
    		 potential marker
    		 NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Placode (cluster: 15)
    Comitted progenitors (cluster: 9)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Neuron (cluster: 6)
    		 potential marker
    		 NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Neuron (cluster: 6)
    Neuron (cluster: 9)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Retina neuroblasts (cluster: 6)
    		 potential marker
    		 NA
    GSE158142 (2dpf) head baseline 2dpf, untreatment Retina neuroblasts (cluster: 7)
    		 potential marker
    		 NA
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Neuronal precursor cells (cluster: 6)
    		 potential marker
    		 NA
    GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg Bipolar cells (cluster: 5)
    		 potential marker
    		 NA
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment Amacrine cells (cluster: 1)
    Bipolar cells (cluster: 2)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Bipolar cells (cluster: 1)
    Retinal progenitors (cluster: 3)
    Bipolar cells (cluster: 1)
    Retinal progenitors (cluster: 3)
    		 potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos
    GSE158142 (3dpf) head baseline 3dpf, untreatment
    PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment
    PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih
    PRJNA672101 (WT) retina baseline 5mpf, three retinas from WT zebrafsih
    GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
    GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/-
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT

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