GENE ID: ENSDARG00000099389

Symbol Location Gene type Genome version Species
cdo1 KN149707.2: 4029 ~ 7435 (+) protein_coding GRCz11 Danio rerio

MARKER



EXPRESSION

Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Progenitors (cluster: 11)
Radial glia (cluster: 13)
Microglia (cluster: 18)
 potential marker
potential marker
potential marker
 NA
NA
NA
PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain Radial glia (cluster: 3)
 potential marker
 NA
GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos Skin (cluster: 10)
 potential marker
 NA
PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells Pigment cells (cluster: 5)
 potential marker
 NA
PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 10)
Intesinal epithelial cells (cluster: 17)
Hepatocytes (cluster: 20)
Epidermal cells (cluster: 9)
 potential marker
potential marker
potential marker
potential marker
 NA
NA
NA
NA
PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 16)
Cranial neural crest (cluster: 19)
Cranial neural crest (cluster: 27)
 potential marker
potential marker
potential marker
 NA
NA
NA
PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 22)
 potential marker
 NA
PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured Mesenchymal cells (cluster: 5)
 potential marker
 NA
PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury Mesenchymal cells (cluster: 7)
 potential marker
 NA
PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury Heart primordium (cluster: 2)
Mesenchymal cells (cluster: 8)
 potential marker
potential marker
 NA
NA
PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured Mesenchymal cells (cluster: 11)
 potential marker
 NA
PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury Mesenchymal cells (cluster: 7)
 potential marker
 NA
PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Smooth muscle cells (cluster: 6)
 potential marker
 NA
GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated Brush border cells (cluster: 8)
 potential marker
 NA
GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated Brush border cells (cluster: 4)
 potential marker
 NA
GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Brush border cells (cluster: 2)
 potential marker
 NA
GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS Enterocytes (cluster: 2)
 potential marker
 NA
GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS Enterocytes (cluster: 1)
 potential marker
 NA
GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA Brush border cells (cluster: 3)
 potential marker
 NA
GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS Brush border cells (cluster: 2)
 potential marker
 NA
GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA Brush border cells (cluster: 3)
 potential marker
 NA
PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae Epidermal cells (cluster: 1)
Support cells (cluster: 3)
 potential marker
potential marker
 NA
NA
PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae Epidermal cells (cluster: 2)
 potential marker
 NA
PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Basal cells (cluster: 6)
 potential marker
 NA
PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Smooth muscle cells (cluster: 3)
 potential marker
 NA
GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg Rod opsin (cluster: 4)
 potential marker
 NA
PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih Muller glia cells (cluster: 13)
 potential marker
 NA
PRJNA672101 (WT) retina baseline 5mpf, three retinas from WT zebrafsih Muller glia cells (cluster: 5)
 potential marker
 NA
PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Non-follicular epithelium (cluster: 3)
 potential marker
 NA
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Chondrocytes (cluster: 16)
Epidermal cells (cluster: 7)
Epidermal cells (cluster: 9)
 potential marker
potential marker
potential marker
 NA
NA
NA
GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
GSE151354 (wild type) cartilage baseline 21dpf, wild type
PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment
GSE158142 (24hpf) head baseline 24hpf, untreatment
PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury
PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl
GSE150498 (DSS treated) intestine disease 6dpf, DSS treated
GSE137784 (no HCC) liver baseline 6mpf, male, isolated from the CreLox zebrafish with HCC
GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC
GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours
GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment
GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment
GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment
GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment
PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
PRJNA641144 (C_INV) tumor disease adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (D_INV) tumor disease adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (D_PRO) tumor disease adult, ZMEL1-PRO cells in vitro individual culture
GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT

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