Gene
RNA
| Item | Value |
|---|---|
| gene id | G245856 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 5637654 ~ 5643340 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU279078 | True | 500 | TUCP | 0.55 | 3 | 5637654 | 5643340 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_05626464_05631670 | NA | coding | upstream | 5853 | 5626464 ~ 5631801 (+) |
| CI01000057_05596837_05615278 | PPARG | coding | upstream | 21644 | 5596837 ~ 5616010 (+) |
| CI01000057_05564489_05579041 | NA | coding | upstream | 57843 | 5564489 ~ 5579843 (+) |
| CI01000057_05535136_05545646 | NA | coding | upstream | 90975 | 5533651 ~ 5547218 (+) |
| CI01000057_05503547_05504435 | NA | coding | upstream | 133125 | 5502755 ~ 5504529 (+) |
| CI01000057_05664038_05668068 | SLC11A2, NRAMP-ALPHA | coding | downstream | 20698 | 5664038 ~ 5668165 (+) |
| CI01000057_05678941_05683978 | ALAS1 | coding | downstream | 35601 | 5678941 ~ 5684022 (+) |
| CI01000057_05700512_05711609 | POC1A.L, POC1A | coding | downstream | 57172 | 5700512 ~ 5711753 (+) |
| CI01000057_05764224_05772045 | DUSP7 | coding | downstream | 120884 | 5764224 ~ 5772045 (+) |
| CI01000057_05776252_05786478 | NA | coding | downstream | 130968 | 5774308 ~ 5787578 (+) |
| G245838 | NA | non-coding | upstream | 84037 | 5548919 ~ 5553617 (+) |
| G245843 | NA | non-coding | upstream | 114585 | 5506979 ~ 5523069 (+) |
| G245834 | NA | non-coding | upstream | 153243 | 5484204 ~ 5484411 (+) |
| G245833 | NA | non-coding | upstream | 153692 | 5483734 ~ 5483962 (+) |
| G245878 | NA | non-coding | downstream | 180388 | 5823728 ~ 5827840 (+) |
| G245880 | NA | non-coding | downstream | 184842 | 5828182 ~ 5830408 (+) |
| G245933 | NA | non-coding | downstream | 194268 | 5837608 ~ 5837837 (+) |
| G245940 | NA | non-coding | downstream | 303112 | 5946452 ~ 5946689 (+) |
| G245883 | NA | non-coding | downstream | 309453 | 5952793 ~ 5961077 (+) |
| G245725 | NA | other | upstream | 534048 | 5098685 ~ 5103606 (+) |
| G245486 | NA | other | upstream | 1425573 | 4209897 ~ 4212081 (+) |
| CI01000057_03842028_03844033 | NDUFS7.S, MGC85267, NDUFS7 | other | upstream | 1792963 | 3842028 ~ 3844691 (+) |
| G245401 | NA | other | upstream | 2099212 | 3537569 ~ 3538442 (+) |
| G245857 | NA | other | downstream | 11936 | 5655276 ~ 5657239 (+) |
| CI01000057_05912175_05916639 | NA | other | downstream | 268473 | 5911767 ~ 5917211 (+) |
