RNA id: TU153924


Basic Information

Item Value
RNA id TU153924
length 2005
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G104236
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 6425929 ~ 6428137 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGGAGCACATTATTAGCCGATATGCATGAAGTTAAGAAGTAATTCAAGTAGTGGGGGAGAGGCATTTACCTTGTGTTGTCTTCCCACATAGTACAGAATGGGCAGAGGGTCGAGGACTGCAGGCGCGCAGCACGGCTGAGCAGATGCCCCGGGGTTGTGGTGTTTGTACAAGGCTAATATCTGTGAGACAAATACATATACCATTTGATACCGGATATGGATAACTGATATGTGAACTGACAAATGCATTCACTCACCCTTGATCAAATATAGAGCATATAGAGCACATGATAACAGATGGCTGAAAGTTACATTACGCCATATTTTAATCATGAGTTTAGATGCGCACTTGGTAGGATATTAGCAAAAGGTGTAAAACTGCACCATGAAACACAACTAAAATTAGTAATTAGAAATGTAACGCAATCCGTTAATTGGATCATTCATTTGTCAAAAGCTAGAAATGAATAGCATGGCTCTTTAAACAACATGTTATGATAAAAGAATTCGGTTCACCTGTAGAGCAGGTCAAAAAAGGCAATTATAAAAAGTCGTTATCAGATTAATTCGATACAGCTTTGATTCACAGCGTTATATTGCCACCCTATCAATTATACGCAGTTGTTACACTGATATTTCCTTCTAAGTATCTCATGTCCGTCTGGATACTATCTGCATTGTAAATGAATGGTGCTGTGAAGGAGAACGTttacccaaaaaggaaaaatctgtcatcacaTACTTTCCCTCATgcatttccaaacctgtatcagttttttcttcttcagtagaacacacacgcacaaaaaaacctgatattttgtgaaatgttttggtAATTCCGTCCGTACAGtcaaagcaggaaaaaaaactgttgaaatTCGAAGCTCGAAAATCTGAAAAGAACATCACTGTTATAACTCAAGATGTAATGACATCAAACGTATGGCATTTCAGCCCTTGGGGAAACTAGTCATTCAAAACTAGTTTTTTGTGCCAACTTTTGCACTTCCTCTCTATCCTTCGCAAATGGCCCTCTGGATAGTACCGTACCTCTGTGCATTGAAAATGAACTAATGTAGAGCCACAGGTGCAAGGCTGAACACTTATTACACAGATTCCAACTCAAAGAAATCTATCATCACTTTCTTAAGACGGTGTTGTGTATCCCTGCTCTAGAAATGACAGGAACCAACCAGAGCAAGCAAATATTGCAGGCAGGAAATTTCCCTTCTCGATCACCAATTCCACTTTGTGAATTGCTACAATATCCGCACTATACACTTggcaaaacaactaaaaacactTGAGAGCAGCCAGGCTACAGTGCGTTGAAGAATGATCACGTGACAACTAAAGCGCGCGACTCGAACCATGTACTAAATTGTAAACAGATTAGAAACAGTGCATCCCCAATCACGTTAAAAACATAAAGTTGTTCTGGGAAAGTGTTCCTCTATGTGATTACGGGCTAATATTGGCACAAGCCTTTGACAGCACCAAAGAAGAGTTGAAGGATTCCTTTCAACTTCTTCAGATGAAGGAGCATGTTCAGACATACTGTAGCTTTTGTTACACCGTCGCTGGTGAAGTACACGCTGTTACATAGCTATGCGTCAGCTTCGCTGGTCAAACAGCACCCTACCTGAGAGTATTTGTTCTCAGCGTTCCAGATGTAGGTGCAGGAGCCCATGCAGTAATTGGCAAAGTATCCCTTCGGCTTGTGGATCCACTTCCAACCCAAATCTCTCCGAAAGTCGATGTAAAGCTCCCGCATACAGCACGTCTCGGTTTTTCTGCCAGAGATCATCACACGTTTCATCGGTGCCTACGGCTCGTTTTCTGCGAGTGGATGCAAGGGAGTTGCCATTAGAAGGCAAAGATAAAGCCAGAATATAAGGCTTCACCATCATCTCCGACAGACCAGCAGTGTCACCTCTTTGCTTGTCTAGTCCTAAAATACAAGCATAGAGTACACAGATTACATCGAAGATTATATCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153596 lncRNA downstream 245129 6179424 ~ 6180800 (-) True G104019
TU153591 lncRNA downstream 248687 6175599 ~ 6177242 (-) True G104015
TU153583 lncRNA downstream 252475 6169468 ~ 6173454 (-) True G104010
TU153582 lncRNA downstream 304008 6121614 ~ 6121921 (-) True G104009
TU153580 lncRNA downstream 305789 6119865 ~ 6120140 (-) True G104007
TU153930 lncRNA upstream 36227 6464364 ~ 6464861 (-) True G104240
XR_006252629.1 lncRNA upstream 57675 6485812 ~ 6486966 (-) True LOC122358561
TU153948 lncRNA upstream 60661 6488798 ~ 6489501 (-) True G104249
TU153968 lncRNA upstream 186157 6614294 ~ 6615539 (-) True G104258
TU153994 lncRNA upstream 289670 6717807 ~ 6718527 (-) True LOC122358743
XM_043258884.1 mRNA downstream 13234 6397789 ~ 6412695 (-) False LOC122358910
XM_043258882.1 mRNA downstream 13234 6397789 ~ 6412695 (-) False LOC122358910
XM_043258880.1 mRNA downstream 13234 6397789 ~ 6412695 (-) False LOC122358910
XM_043258881.1 mRNA downstream 13265 6397789 ~ 6412664 (-) True LOC122358910
XM_043259200.1 mRNA downstream 31709 6349486 ~ 6394220 (-) False zmp:0000001236
XM_043259709.1 mRNA upstream 114731 6542868 ~ 6548235 (-) True LOC122359416
XM_043259711.1 mRNA upstream 154659 6582796 ~ 6604213 (-) True LOC122359418
XM_043258416.1 mRNA upstream 202619 6630756 ~ 6631912 (-) True LOC122358559
XM_043258474.1 mRNA upstream 241710 6669847 ~ 6721194 (-) True LOC122358587
XM_043258573.1 mRNA upstream 371239 6799376 ~ 7023464 (-) True LOC122358733
TU153584 other downstream 279412 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 676590 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 986982 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 2609187 3816062 ~ 3816742 (-) True G103449
TU152821 other downstream 2670762 3753341 ~ 3755167 (-) False LOC122359312
TU154060 other upstream 686289 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 1141709 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 1211507 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 1211507 7639644 ~ 7640339 (-) False G104628
TU154597 other upstream 1529699 7957836 ~ 7958231 (-) True G104695

Expression Profile