RNA id: XM_043259711.1


Basic Information

Item Value
RNA id XM_043259711.1
length 2499
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC122359418
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 6582796 ~ 6604213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTCCTTATATGGATTTGGTTGCGCTCAAGGGGAGACTTGTCTAAAGTGGTGTGTTTAGTGCGGAGCGGAGATTTAGCCATGGTGTTTGTCAGTGGTAGCTGTGTTCAGGACGGAAAGggTGAAGTTTGGGTAGGTGTGCGTCCTGCTTTGCCAGTGGATGGTGTCTCTATGATCCTGGGAAATGACATTGCAGGTAGTAGAGTTTGGGCTGATGTTCCTCCTCCTGCCCAGATGCAAGGGGACTGGGAGGAAGCACTGCCCTGGATGCTGTTGTCTGCTCGTGAGGTGGTCCAGGAGAGTACAGACTTTAGCCCAAATGACCTTGTTTTTGGTCATAAGGTTCGGGGCCCCCTAGCACTGTTGAAGGACGGCTGGACAGAGTCAGATCCGCCAAGAAGTCTTGAGACTTTAAcacagtctgtgtttaaccGTCTGTCATCATTCAGTCAGTATGGAGCTCAGTCAACTTCCTCTTGTGTTCTAGGAGAAACAGTCACTCTCAGATGTGACATATATGATGAAGGAGTCACTAGCTGGAGATACTTCTGGTATAAAGAAGGTTTAGGCAGAGTTTTCAGTGATGGACAGGAACTCACAATCAGTTCTGTTACTGAGTCTGACTCAGGTGAATACTCCTGTGATGGATTTAAAGGATCGAATGGGTCTCTCCGCAGTGATGAAGTTACTCTGACAGTATCAGAAAGACCAAAACCCAAAGTGATCATTAAACCTGATCAACATGTGTTCAGAGGAGAAACAGTCACTCTCAGATGTGACATATATGATGAAGGAGTCACTAGATGGAGATACAGCTGGTATAAAGATAATTCAAGAAGTGTTTTCAGTGATGGACAGGAACACACATTCAGTTCTGTTACTGAGTCTGACTCAGGTGAATACTCCTGTGAAGGATCAGAGATCAGAGGATCACGCCGGTCACACACGAGTGATAAAGTTACTCTGAAAGTATCAGGTCTTCCTAAACTGACTCTGACAGCTGATCCTCAGAGTCCAGTGTTCACCGGAGACTCAGTTACTCTGAGATGTGAGGGGATTCAGTCACAGAATGGATGGGAGTTTCTCTGGAGAAAAGACTCAAACCCTGAATCTACTGAAGATCAAACTAAAACAATCAAACCTGAGAAAGTCTCTGATGGAGGAAAGTACAGCTGCAGAGCTCGAAGAAGAGGAAGATGTTACACAGATTACAGTAAAGCTGTAACAGTAACAGTATACGGCaaACCAAAACCCAAAGTGACCATTAAACCTGATCAACATGTGTTCAGAGGAGAAACAGTCACTCTCAGATGTGACATATATGATGAAGGAGTCACTAGCTGGAGATACAGCTGGTATAAAGATAATTCAAGAAGAGTTTTCAGTGATGGACAGGAACACACATTCAGTTCTGTTACTGAGTCTGACTCAGGTGAATACTCCTGTGAAGGATCAGAGATCAGAGGATCACGCCGGTCACACACGAGTGATAAAGTTACTCTGAAAGTATCAGATCCCAAATCAGTTTTAAGTGTTTCTCCACAGAAGTGGTTGACTGAAGGAGAtccagtgactctgatctgtgaGGTTCACAACTTCTCTACAGGCTGGACGTTCAGCTGGTTCACTTTAACTGAATCATCAGGTAAGTTATGATGTGGTTATCATCTGctctcagacagcagcagaggagcaggaggaagaTACAGGATCAGTTCTGCTGCTGTAGATCACACAGGAGTTTATGTgtgcagagcagagagagagaaatcatcTTATAAAACACAGTACAGCAACAAACAGCTGCTGTGGGTCACCGGTGTTTCTGCTCCAGTCTCTCTGAGGGTCAGTCCCAGCAGAACTCAACACTTCAgatctgactctctctctctgagctgtgaAGACCAGAGTAACTCTACTGTATGGAGAGTGAGAACATACACAGACCTCTGGGGACTGAAAGATTGTTCATCAATACCTCGAGGATCACACACAGGATCTACATGTACAATCAGTTACGTCTATACATCACTCACTGGAGTGTACTGGTGTGAGTCTGAATCTGGAGAGAAGCATCATCCTGTTAATATCACTGTACACTCTGAAGTGATTCTGGAGAGTCCTGTTCATCCTGTGACTGAAGGAGATAGTCTGACTCTACACTGTTTATATCGATACACTCCATCAAACCTCAGAGCTGATTTCTATAAAGATGGATCACTCATCCAGAATCAAACTACAGAGATGATCATCTCTCCTGTCTCAAAGTCACACGAGGGTTTCTACTCCTGCAAACACCCAGAGAGAGGAGAGTCACCCAAGAGCTGGATCTCAGTCAGACCTTCTACAGGCTCAGTATCTGAGGATCTCAAACCCATGATAATTGGAGTAACAGCAGGACTGACTGCAGTCTTCATCGTTGTCTTCTTGGTTCTGCTCTGGAGCTACAGAAACAACAAAggtctttttaattttacatcatACATTTGCAGACGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153948 lncRNA downstream 93295 6488798 ~ 6489501 (-) True G104249
XR_006252629.1 lncRNA downstream 95830 6485812 ~ 6486966 (-) True LOC122358561
TU153930 lncRNA downstream 117935 6464364 ~ 6464861 (-) True G104240
TU153908 lncRNA downstream 153035 6367802 ~ 6429761 (-) True G104225
TU153968 lncRNA upstream 10081 6614294 ~ 6615539 (-) True G104258
TU153994 lncRNA upstream 113594 6717807 ~ 6718527 (-) True LOC122358743
XR_006252638.1 lncRNA upstream 113852 6718065 ~ 6718415 (-) False LOC122358743
XR_006252637.1 lncRNA upstream 114852 6719065 ~ 6720572 (-) True LOC122358742
TU153965 lncRNA upstream 114858 6719071 ~ 6720975 (-) True G104255
XM_043259709.1 mRNA downstream 34561 6542868 ~ 6548235 (-) True LOC122359416
XM_043258884.1 mRNA downstream 170101 6397789 ~ 6412695 (-) False LOC122358910
XM_043258882.1 mRNA downstream 170101 6397789 ~ 6412695 (-) False LOC122358910
XM_043258880.1 mRNA downstream 170101 6397789 ~ 6412695 (-) False LOC122358910
XM_043258881.1 mRNA downstream 170132 6397789 ~ 6412664 (-) True LOC122358910
XM_043258416.1 mRNA upstream 26543 6630756 ~ 6631912 (-) True LOC122358559
XM_043258474.1 mRNA upstream 65634 6669847 ~ 6721194 (-) True LOC122358587
XM_043258573.1 mRNA upstream 195163 6799376 ~ 7023464 (-) True LOC122358733
XM_043258564.1 mRNA upstream 237732 6841945 ~ 6859791 (-) True LOC122358728
XM_043258563.1 mRNA upstream 381117 6985330 ~ 6994184 (-) True LOC122358727
TU153584 other downstream 436279 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 833457 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 1143849 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 2766054 3816062 ~ 3816742 (-) True G103449
TU152821 other downstream 2827629 3753341 ~ 3755167 (-) False LOC122359312
TU154060 other upstream 510213 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 965633 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 1035431 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 1035431 7639644 ~ 7640339 (-) False G104628
TU154597 other upstream 1353623 7957836 ~ 7958231 (-) True G104695

Expression Profile