RNA id: XM_043221840.1


Basic Information

Item Value
RNA id XM_043221840.1
length 2100
RNA type mRNA
GC content 0.46
exon number 10
gene id sept8a
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 16852067 ~ 16869006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCCAaccacagtgtgtgtgtgtgtgtgtatgcgctcGCGTGTGTGTCAGCGGACGGTGAGAGAGAcgaaggcaggcaggcaggcaggcagctCCCTTTCGCCTTATCTAAACACATACATTCCTCATCATGGCGGCCACGGATGTAGACATATTTTCTAATGAAGAAAAGCGGAACCTCAGCCTTGGCGGTCATGTTGGCTTTGACAGTCTGCCCGATCAGCTGGTCAGTAAATCGGTGACTCAGGGTTTCTGCTTCAACATCCTCTGTGTGGGTGAGACGGGCATCGGCAAGTCGACGTTAATGAACACCCTTTTTAACACCATGTTTGAAAACGAGGAGGCCAGCCATTACCAAAACGGTGTTTACCTGCGGCCCAGAACGTACGACTTGCAAGAGAGCAACGTCCACCTAAAACTGACCATTGTCGACACGGTGGGCTTCGGGGACCAGATCAACAAAGAAGAAAGCTATAAACCCATTGTGGACTATATCGACACACAGTTTGAAAACTACCTGCAAGAAGAGCTGAAAATAAAGCGTTCTTTATTCAATTACCACGACACCAGAATCCACATCTGCCTGTACTTCATCGCTCCTACGGGACACTCGCTCAAGTCTTTGGATTTAGTCACCATGAAGAAGTTGGACAGCAAGGTGAACATCATTCCTATTATTGCTAAAGCTGACACGATTTCTAAGAGTGAACTGCACAAGTTCAAGATCAAAATCATGAGCGAGCTGGTTAGCAACGGTGTTCAGATCTACCAGTTTCCCACAGACGACGAAGCCGTGACAGAAATAAACTCCTCTATGAACGCCCACCTTCCCTTCGCTGTGGTGGGCAGCGTGGAGGAGGTGAAGGTGGGGAATAAGACGGTGAGGGCCAGGCAGTATCCGTGGGGAGTGGTTCAAGTGGAGAACGAGAGTCACTGTGATTTCGTGAAGCTGCGGGAGATGCTGATCAGAGTGAACATGGAGGATCTGCGAGAACAGACTCACGCCAGGCACTACGAACTCTACAGGCGCTGTAAACTAGAGGAGATGGGCTTCAAAGACACCGACCCAGACAGCCAGCCTTTCAGTCTACAGGAGACATATGAAGCCAAAAGGAAGGAGTTTCTTGGAGACCTGCAAAGGAAGGAAGAGGAGATGCGGCAGATGTTCGTGAACAAAGTGAAGGAGACTGAGGGCGAGctgaaggagaaggagagagagTTACACGAGAAGTTCGAGCAGCTGAAGCGCATGCACcaggaggagaagaggaaggTGGAGGAGAAGAGACGGGAGCTAGAGGAGGAGATGAACGCCTTCAACCGGAGGAAGGTGGCCGCAGAGACCCTCTCGCTCTCACAGCCCCTCAAGAAGGACAAAGACAAGAAAAAttaatTTATGAGCACACCGCAGGCCATCCACGGACTTTCCTCTATTAACATTGCAGCATCagcttttggttttttttgacTCGTTCCTCATGACATTGTGTTGAAGGACCAAAGACCCTGATGGGAAGACAGAGATGCATTATGGGggctcttgtttgtttgtttgtttgttttcaggtgGGTGGGGTCATTTTTAATGCCCCTCCCCTCATCAATcctattttagttttgtttcggtgcaagtgtgttttttttttgttctcttttaatacacattttgttttggtaCCAACCATCTGTCTTACAGTCAGGCCAAATTTTGTGACGTACTTATTCAGTACATGTTTCCCTTGCCAGTGTACAGTAGTATTTAAGATCTGAGCCAAACTCATTAGCACAGCACAGTGATATACTAACGCACACACgtgtatgattttattattattattataagcctGCATGGGTATGGCTAAATAAAGCagtcttagttttttttttttggtgctgtttttaaaagttcatgACAACCgatatgcaaattatatttttttgtattttaatattaggcTGTATGGTATTCAGGTGACGATGTTTATCACATATAAGCCGTTCTGTAGCACTAAAGGCCATCTGAACTAAAGTAACTTCTACAGATCTTCATTCGCATAAGGAAATAAATGTTGGAAATAAACGCTCCCCTGATTTCCTTCA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247504.1 lncRNA downstream 20191 16834707 ~ 16835503 (-) True LOC122326728
XR_006247503.1 lncRNA downstream 20191 16834764 ~ 16835503 (-) False LOC122326728
TU217511 lncRNA downstream 37908 16817443 ~ 16817786 (-) True G147239
TU217480 lncRNA downstream 92274 16763104 ~ 16763420 (-) True G147223
TU217472 lncRNA downstream 102804 16748007 ~ 16752890 (-) True G147217
TU217532 lncRNA upstream 664 16869670 ~ 16872057 (-) True G147252
TU217552 lncRNA upstream 77607 16946613 ~ 16947391 (-) True G147265
TU217604 lncRNA upstream 188872 17057878 ~ 17060066 (-) True G147295
TU217785 lncRNA upstream 462794 17331800 ~ 17333076 (-) True G147413
TU217786 lncRNA upstream 472733 17341739 ~ 17342024 (-) True G147414
XM_043221837.1 mRNA downstream 8473 16838338 ~ 16847221 (-) False frmd7
XM_043221836.1 mRNA downstream 8473 16838338 ~ 16847221 (-) False frmd7
XM_043221838.1 mRNA downstream 8473 16838338 ~ 16847221 (-) False frmd7
XM_043221835.1 mRNA downstream 8473 16838338 ~ 16847221 (-) True frmd7
XM_043222098.1 mRNA downstream 51400 16796134 ~ 16804294 (-) True atg4a
XM_043221762.1 mRNA upstream 4980 16873986 ~ 16899688 (-) False shroom1
XM_043221763.1 mRNA upstream 4980 16873986 ~ 16899688 (-) True shroom1
XM_043220900.1 mRNA upstream 31941 16900947 ~ 16933078 (-) True aff4
XM_043220899.1 mRNA upstream 31941 16900947 ~ 16925581 (-) False aff4
XM_043220901.1 mRNA upstream 64206 16933212 ~ 16936901 (-) True zcchc10
XR_006247502.1 other downstream 8473 16839576 ~ 16847221 (-) False frmd7
XR_006247428.1 other downstream 125664 16720083 ~ 16730030 (-) False LOC122326138
XR_006247552.1 other downstream 138985 16716499 ~ 16716709 (-) True LOC122327019
XR_006247559.1 other downstream 139459 16716159 ~ 16716235 (-) True LOC122327026
XR_006247561.1 other downstream 141068 16714550 ~ 16714626 (-) True LOC122327028
TU217615 other upstream 284576 17153582 ~ 17254372 (-) False fstl4
TU217955 other upstream 1257223 18126229 ~ 18127999 (-) True G147526
TU217960 other upstream 1301074 18170080 ~ 18170584 (-) True G147531
TU218205 other upstream 1589368 18458374 ~ 18468851 (-) True G147673
XR_006247482.1 other upstream 1680525 18549531 ~ 18552744 (-) True rbm11

Expression Profile