RNA id: TU19292


Basic Information

Item Value
RNA id TU19292
length 315
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G17188
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8514868 ~ 8515415 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATCAGAGAGAGACCAGGATCATCAGCAGTCTTGAAGGTAAGGTCAAACCCACGATCTGCTAAACTGCGGAAGAAGATTGAATGGGTGTCTCTGATGTTGGGATTGTCCAACAAAACGAGAGTCTTTCCGTCTCCTAAAACCGCCTGCAACATTAACGCCAGGGATAAAGCAAACAGAGTGCTTTTGCTGAATCCACCAGACAATGTGGGAAACATTGTAGCACGCCGTCTTTTGCAGGTTAATGTTGCCACAGTCGCGGTGTCCCTCATTGACAAGCAACCCATCGCCATTTTCCTCCTTTGGACAACGTCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19416 lncRNA upstream 6387 8506767 ~ 8508481 (+) True G17294
TU19414 lncRNA upstream 21163 8493434 ~ 8493705 (+) True G17292
TU19323 lncRNA upstream 117956 8391063 ~ 8396912 (+) True G17209
TU19329 lncRNA upstream 231974 8279353 ~ 8282894 (+) True G17215
TU19366 lncRNA upstream 433126 8081512 ~ 8081742 (+) True G17252
TU19417 lncRNA downstream 842 8516257 ~ 8516801 (+) True G17295
TU19307 lncRNA downstream 15108 8530523 ~ 8533627 (+) False G17194
TU19306 lncRNA downstream 15196 8530611 ~ 8533627 (+) True G17194
TU19435 lncRNA downstream 52716 8568131 ~ 8568362 (+) True G17310
TU19436 lncRNA downstream 52988 8568403 ~ 8568689 (+) True G17311
CI01000001_08444733_08450428.mRNA mRNA upstream 63944 8444733 ~ 8450924 (+) True CI01000001_08444733_08450428
CI01000001_08427984_08438912.mRNA mRNA upstream 75438 8427984 ~ 8439430 (+) True CI01000001_08427984_08438912
CI01000001_08365139_08380569.mRNA mRNA upstream 134174 8364229 ~ 8380694 (+) True CI01000001_08365139_08380569
CI01000001_08271059_08344201.mRNA mRNA upstream 170667 8271059 ~ 8344201 (+) True CI01000001_08271059_08344201
CI01000001_08248565_08260072.mRNA mRNA upstream 254767 8248565 ~ 8260101 (+) True CI01000001_08248565_08260072
CI01000001_08540376_08551579.mRNA mRNA downstream 24488 8539903 ~ 8551725 (+) True CI01000001_08540376_08551579
CI01000001_08667814_08671039.mRNA mRNA downstream 152239 8667654 ~ 8671439 (+) True CI01000001_08667814_08671039
CI01000001_08714618_08721009.mRNA mRNA downstream 199203 8714618 ~ 8721182 (+) True CI01000001_08714618_08721009
CI01000001_08721737_08727450.mRNA mRNA downstream 206322 8721737 ~ 8727770 (+) False CI01000001_08721737_08727450
CI01000001_08748236_08757869.mRNA mRNA downstream 232821 8748236 ~ 8758003 (+) True CI01000001_08748236_08757869
TU19348 other upstream 482385 8032124 ~ 8032483 (+) True G17234
TU19033 other upstream 974282 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other upstream 974282 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other upstream 974408 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU17891 other upstream 2799917 5711885 ~ 5714951 (+) True G15995
TU19478 other downstream 700607 9216022 ~ 9228859 (+) True G17353
TU19479 other downstream 719048 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 902913 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 1724485 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 1741697 10257112 ~ 10260714 (+) True G18873

Expression Profile