RNA id: TU36577


Basic Information

Item Value
RNA id TU36577
length 299
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G32239
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11987529 ~ 11987827 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTTTCCCATAATTACTGCTAATCACCTCACCTCTGACCCCCGTAATTGCTTCCTATCAATGCCAACTGTTGACATTCTTAAAATAGAAGATCAAAATGGGGGGGAAGTGAGGGCTGAAACAGCCAGGCTTCCATTGACCCAATACAACACAGCCAAAGACCAATAATTACACTATTACCCTTAGACAGACAACGGCTATTGATTCCAACCTCTTTTAGAAGAGTATATGTCTCTAAAAAAGACTGCATTCAGGGAAATCTATGGTGTTTGAAGGATAATATTAGATTATGATATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36576 lncRNA downstream 1719 11985549 ~ 11985810 (-) True G32238
TU36575 lncRNA downstream 2101 11985217 ~ 11985428 (-) True G32237
TU36569 lncRNA downstream 26151 11961179 ~ 11961378 (-) True G32231
TU36568 lncRNA downstream 26920 11960372 ~ 11960609 (-) True G32230
TU36567 lncRNA downstream 27357 11959915 ~ 11960172 (-) True G32229
TU36578 lncRNA upstream 3781 11991608 ~ 11991819 (-) True G32240
TU36594 lncRNA upstream 178701 12166528 ~ 12166744 (-) True G32256
TU36490 lncRNA upstream 190116 12177943 ~ 12179824 (-) True G32177
TU36597 lncRNA upstream 208546 12196373 ~ 12197128 (-) True G32258
TU36494 lncRNA upstream 280060 12267887 ~ 12322118 (-) False G32179
CI01000004_11974708_11980518.mRNA mRNA downstream 5234 11974644 ~ 11982295 (-) True CI01000004_11974708_11980518
CI01000004_11944095_11946749.mRNA mRNA downstream 40513 11943785 ~ 11947016 (-) True CI01000004_11944095_11946749
CI01000004_11930044_11933982.mRNA mRNA downstream 53373 11929840 ~ 11934156 (-) True CI01000004_11930044_11933982
CI01000004_11826038_11848540.mRNA mRNA downstream 138989 11824907 ~ 11848540 (-) True CI01000004_11826038_11848540
CI01000004_11789063_11823381.mRNA mRNA downstream 162789 11788496 ~ 11824740 (-) True CI01000004_11789063_11823381
CI01000004_12025107_12032154.mRNA mRNA upstream 37280 12025107 ~ 12032952 (-) True CI01000004_12025107_12032154
CI01000004_12048597_12107143.mRNA mRNA upstream 59492 12047319 ~ 12108201 (-) True CI01000004_12048597_12107143
CI01000004_12111607_12123001.mRNA mRNA upstream 123065 12110892 ~ 12123318 (-) True CI01000004_12111607_12123001
CI01000004_12127993_12144790.mRNA mRNA upstream 138773 12126600 ~ 12144790 (-) True CI01000004_12127993_12144790
CI01000004_12170772_12177138.mRNA mRNA upstream 182690 12170517 ~ 12177138 (-) True CI01000004_12170772_12177138
TU36455 other downstream 206578 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 574622 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 1236888 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 2580608 9377937 ~ 9406921 (-) True G30316
TU33670 other downstream 3629402 8354498 ~ 8358127 (-) True G29746
TU36531 other upstream 388341 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 2562973 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 2580966 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 2590631 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 2593579 14581406 ~ 14581873 (-) True G33755

Expression Profile