RNA id: TU36981



Basic Information


Item Value
RNA id TU36981
length 989
lncRNA type read_through
GC content 0.34
exon number 2
gene id G32606
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12600800 ~ 12655827 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCATTTAATTGATGTCAAATGTAGCTTACAAACGGGAAAGACACGTACCATTTTCAAGAATATACAAGGACACAAATCATATATCACACAATCATCTTGTGCAATCTGTCATCTTTGGGGCAGGAACGAATTGTTCAGCAAAGGAAGGATACAAAGAGTCAACCTTAATCCTTATTTACTACCTGTATTTTACAAAATAGTTGCAGAGAGGATACTGGTACAGCTGTAGACCCAGCCATGGCGAAGATTTAAAGAACTGTGAAATAAGTTATAACAAAAGCAACATTTGACTGTTTATTGTGGTGTTGGGATCAGCAATGACCTTTCATTTCTTCCTTTTTTGCGCTTACATCAATACAGAAATCACAGAATACATAGATGTACAAATATAAAGCACACTGTCTCACTCCTAGGGAAAACGTGAGCAGTCAGTCAGTCGGCCAGTCAGGGAAACGAGTCTTGACTCTCCCAGTTCTTTCTTTGAGAAAAAAAAAAAAGTTTACCATGTTCTTGATGTTTCAGAGAGGAAATCTGAACGTAACTTGTAAATGAGAGCACCCTAAAGAGTAAAAGTCCCTTCCCGAGGGAAGAAACTGATGATATGCAACTGGTCTGGGGTCTTAATACTGTATGTTCAATGGAATAATTCCAATTGTTTGTAACAGACAGACGGCATTCAGCATTAAGTTAAAAAAAACGCTGAAAAATGAGGGTGAATAAAAGCAAATCTTTCTATTTCTTAAAAAAAGCAAAGAAAAAGAAAGATATTTTCCCTTGTTTCAGGATTAAATCTACAGTTTTTACTGTATATTTCAATGAAAAATGTACACCTAAATCTTTTAAGTCCTAGTTTGAGTAGTTTATTATTATTATTACTTAAATTTCTTCCTGTACAATGAAATACAACTTCAACTTCAAGACGACAACATCTGCTTTAAAAATACAGAGGGTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37026 lncRNA downstream 6778 12593388 ~ 12594022 (-) True G32647
TU36625 lncRNA downstream 126618 12473942 ~ 12474182 (-) True G32285
TU36621 lncRNA downstream 133471 12467119 ~ 12467329 (-) True G32281
TU36618 lncRNA downstream 138459 12460478 ~ 12462341 (-) True G32278
TU36616 lncRNA downstream 140972 12459600 ~ 12459828 (-) True G32276
TU37101 lncRNA upstream 51231 12707058 ~ 12713176 (-) True G32707
TU37095 lncRNA upstream 119955 12775782 ~ 12781490 (-) True G32701
TU37176 lncRNA upstream 141855 12797682 ~ 12797931 (-) True CI01000004_12781663_12809789
TU37114 lncRNA upstream 257387 12913214 ~ 12921534 (-) True G32720
TU37195 lncRNA upstream 310043 12965870 ~ 12966103 (-) True G32798
CI01000004_12574165_12577698.mRNA mRNA downstream 20621 12574085 ~ 12580179 (-) True CI01000004_12574165_12577698
CI01000004_12550061_12550882.mRNA mRNA downstream 49869 12549886 ~ 12550931 (-) True CI01000004_12550061_12550882
CI01000004_12404227_12411145.mRNA mRNA downstream 189135 12403532 ~ 12411665 (-) True CI01000004_12404227_12411145
CI01000004_12364142_12368537.mRNA mRNA downstream 232128 12364035 ~ 12368672 (-) True CI01000004_12364142_12368537
CI01000004_12345221_12345884.mRNA mRNA downstream 254491 12344810 ~ 12346309 (-) True CI01000004_12345221_12345884
CI01000004_12748162_12752913.mRNA mRNA upstream 92112 12747939 ~ 12753275 (-) True CI01000004_12748162_12752913
CI01000004_12781663_12809789.mRNA mRNA upstream 125698 12781525 ~ 12809789 (-) False CI01000004_12781663_12809789
CI01000004_12823734_12925962.mRNA mRNA upstream 167907 12823734 ~ 12925962 (-) True CI01000004_12823734_12925962
CI01000004_12952019_12956814.mRNA mRNA upstream 295932 12951759 ~ 12956814 (-) True CI01000004_12952019_12956814
CI01000004_13086552_13088659.mRNA mRNA upstream 428997 13084824 ~ 13088898 (-) True CI01000004_13086552_13088659
TU36531 other downstream 216020 12376168 ~ 12384780 (-) True G32207
TU36455 other downstream 819849 11776519 ~ 11780951 (-) True G32150
TU36279 other downstream 1187893 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU35313 other downstream 1850159 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 3193879 9377937 ~ 9406921 (-) True G30316
TU38237 other upstream 1894973 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 1912966 14568793 ~ 14569264 (-) True G33746
TU38255 other upstream 1922631 14578458 ~ 14579001 (-) True G33750
TU38261 other upstream 1925579 14581406 ~ 14581873 (-) True G33755
TU38263 other upstream 1929344 14585171 ~ 14585745 (-) True G33756

Expression Profile