RNA id: CI01000032_03168377_03169554.mRNA


Basic Information

Item Value
RNA id CI01000032_03168377_03169554.mRNA
length 841
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000032_03168377_03169554
representative True

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 3168281 ~ 3169747 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAAAAGAGCAGAGGAAACTTGTTTCTGTGCAGACTGAACAATGGTCCTGTCCAAGATTTCAGTGCCGATGTTGGGAACCGCACCTCCATCAGGATGAGTTACCCTGAAAGCTGCCCAAAGGTGTGGGAAGATATGGATTCAGATCTCAAGTATGTGGCTGTGATCTATAAGTCTGTGGACTTCCACTGGCTTCGTGCAATGATTACCAAGACATCCATTTCGCTGTGGGACTGGCTGTTTTTCTGGCAGAATGTGCCAGTGAGTGTTCCAATCAAGACCTCCCAATTCCGTCTCCTGAATCCAGAGATTATTAGAGAGACGGCCTTGGATCTACTTCACTATCCCAATGCTAGAGAACGGCTCTGGGGCTGGGACCAGAATGTCCCTACTATAGGAGTCTCTGCTCTCAACCTGGCAACATACATATGTGATGAGGTCAGCTTAGCAGGCTTTGGCTATAACCTCAGCCAGAAAGAGGCTCCTCTTCATTACTATGACGACAGACCCATGACATCCATGTTAAAGGAAGCCATGCATGATGTACAGACTGAAACTGTTTTTCTTAAGCATCTGGTAACTTCAGGCAGTATTACTGACCTTACAGATGGAGCAGTTGCAGTTTTCCTGCAAGTGTGGGTCTTTTAAATTGGTTTAATAATAATAATTACACATACACACACACATTTCTAAGTTTAAAAGGTTTTCAGTTAAAACCCTATAGTGTTGTCAAGTCAAAATCCATATGAAGTAATAAGGCACATTGTTAGTTCATCTCTCATGTTGCTTGTAATGATTGAAATTAATTATGTGTGTCTTTTTTTATTCACTAATTAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189563 lncRNA upstream 57936 3110142 ~ 3110345 (+) True G166861
TU189562 lncRNA upstream 61130 3106747 ~ 3107151 (+) True G166860
TU189548 lncRNA upstream 75956 3092109 ~ 3092325 (+) True G166853
TU189541 lncRNA upstream 89185 3078641 ~ 3079096 (+) True G166847
TU189536 lncRNA upstream 103287 3064780 ~ 3064994 (+) True G166842
TU189559 lncRNA downstream 24287 3194034 ~ 3196104 (+) True G166857
TU189510 lncRNA downstream 44875 3214622 ~ 3221521 (+) True G166816
TU189513 lncRNA downstream 51828 3221575 ~ 3235567 (+) True G166819
TU189631 lncRNA downstream 157882 3380973 ~ 3380982 (+) True G166918
TU189696 lncRNA downstream 271961 3441708 ~ 3441992 (+) True G166974
CI01000032_03142737_03156736.mRNA mRNA upstream 9492 3141742 ~ 3158789 (+) True CI01000032_03142737_03156736
CI01000032_03083089_03083664.mRNA mRNA upstream 84135 3081983 ~ 3084146 (+) True CI01000032_03083089_03083664
CI01000032_03046961_03053202.mRNA mRNA upstream 114355 3046961 ~ 3053926 (+) True CI01000032_03046961_03053202
CI01000032_02857743_02864895.mRNA mRNA upstream 303306 2856913 ~ 2864975 (+) True CI01000032_02857743_02864895
CI01000032_02827399_02829641.mRNA mRNA upstream 338563 2827399 ~ 2829718 (+) False CI01000032_02827399_02829641
CI01000032_03210864_03212974.mRNA mRNA downstream 41117 3210864 ~ 3214164 (+) True CI01000032_03210864_03212974
CI01000032_03323107_03325296.mRNA mRNA downstream 153360 3323107 ~ 3325637 (+) True CI01000032_03323107_03325296
CI01000032_03326549_03327076.mRNA mRNA downstream 156802 3326549 ~ 3328864 (+) False CI01000032_03326549_03327076
CI01000032_03535729_03536058.mRNA mRNA downstream 365982 3535729 ~ 3536863 (+) True CI01000032_03535729_03536058
CI01000032_03959089_03961976.mRNA mRNA downstream 789192 3958939 ~ 3962210 (+) False CI01000032_03959089_03961976
TU189458 other upstream 211068 2956788 ~ 2957213 (+) True G166765
TU189420 other upstream 318597 2835622 ~ 2849684 (+) True G166734
TU189422 other upstream 318694 2835314 ~ 2849587 (+) False G166734
TU188377 other upstream 392233 2775093 ~ 2776048 (+) True G165833
TU188379 other upstream 392945 2758732 ~ 2775336 (+) False G165833

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014123 False 4054 lncRNA 0.39 5 NC_007125.7 9485067 ~ 9499220 (+)