RNA id: TU189562


Basic Information

Item Value
RNA id TU189562
length 269
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G166860
representative True

Chromosome Information

Item Value
chromosome id CI01000032
NCBI id null
chromosome length 4185905
location 3106747 ~ 3107151 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACGGAAGCCCCAAACGGCCATGGATTATTATTTTTTTCTATCTTGTTTTGTCGTGATCACGACTTAATTTTCTCGTGATCTCGAGATAAAAGTTCTTTTTACAGTGATTGATTCTGAAACACACTGTACCCGGATTCTACTGTTGCTATAGTAACGAACACAACTTTCACGCGCATCTGATCGACGGATAAATCATGCGCTCTTATATCTTGTGGATATTTCAGCAAAATGTTTACTTCGCTTAATAATAAAATTTACAATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189548 lncRNA upstream 14422 3092109 ~ 3092325 (+) True G166853
TU189541 lncRNA upstream 27651 3078641 ~ 3079096 (+) True G166847
TU189536 lncRNA upstream 41753 3064780 ~ 3064994 (+) True G166842
TU189535 lncRNA upstream 42064 3064241 ~ 3064683 (+) True G166841
TU189530 lncRNA upstream 70270 3036167 ~ 3036477 (+) True G166836
TU189563 lncRNA downstream 2991 3110142 ~ 3110345 (+) True G166861
TU189564 lncRNA downstream 3755 3110906 ~ 3527585 (+) True G166862
TU189559 lncRNA downstream 86883 3194034 ~ 3196104 (+) True G166857
TU189510 lncRNA downstream 107471 3214622 ~ 3221521 (+) True G166816
TU189513 lncRNA downstream 114424 3221575 ~ 3235567 (+) True G166819
CI01000032_03083089_03083664.mRNA mRNA upstream 22601 3081983 ~ 3084146 (+) True CI01000032_03083089_03083664
CI01000032_03046961_03053202.mRNA mRNA upstream 52821 3046961 ~ 3053926 (+) True CI01000032_03046961_03053202
CI01000032_02857743_02864895.mRNA mRNA upstream 241772 2856913 ~ 2864975 (+) True CI01000032_02857743_02864895
CI01000032_02827399_02829641.mRNA mRNA upstream 277029 2827399 ~ 2829718 (+) False CI01000032_02827399_02829641
CI01000032_02773889_02774396.mRNA mRNA upstream 332246 2773889 ~ 2774501 (+) False CI01000032_02773889_02774396
CI01000032_03142737_03156736.mRNA mRNA downstream 34591 3141742 ~ 3158789 (+) True CI01000032_03142737_03156736
CI01000032_03168377_03169554.mRNA mRNA downstream 61130 3168281 ~ 3169747 (+) True CI01000032_03168377_03169554
CI01000032_03210864_03212974.mRNA mRNA downstream 103713 3210864 ~ 3214164 (+) True CI01000032_03210864_03212974
CI01000032_03323107_03325296.mRNA mRNA downstream 215956 3323107 ~ 3325637 (+) True CI01000032_03323107_03325296
CI01000032_03326549_03327076.mRNA mRNA downstream 219398 3326549 ~ 3328864 (+) False CI01000032_03326549_03327076
TU189458 other upstream 149534 2956788 ~ 2957213 (+) True G166765
TU189420 other upstream 257063 2835622 ~ 2849684 (+) True G166734
TU189422 other upstream 257160 2835314 ~ 2849587 (+) False G166734
TU188377 other upstream 330699 2775093 ~ 2776048 (+) True G165833
TU188379 other upstream 331411 2758732 ~ 2775336 (+) False G165833

Expression Profile