RNA id: TU468235


Basic Information

Item Value
RNA id TU468235
length 352
RNA type TUCP
GC content 0.41
exon number 3
gene id G407509
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4925968 ~ 4928818 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCGGACCCAACAACGCTCCTACTGTGATGGCGACCAATATCGAGCAGATTTTCAGGGATTTTGTAATGAGTAAGATTAAAGAAATCGAGGATGAAACTCAAGAAATCAGTGTGACAGATGAGCCACAGTCTGAACCTGTGACAGAGATGATAGAAGATGGACTAAAGGAAGAAAAAATTAACACACCAACAGATAAAATCACACATACTGACCTCCAAGATAACCATGGTAAAGAGGACACCAGCACTAAACACAGGAAGAGTAAAAAGCACAAAAAACACAAAAGCAAAAAGAAGAGAAAGAAACGGAAAGAAGGAAAAGACAGCAGCTCTGAGTCTGAGTCCGACAAAGAGACGCACGAAAGTGGAAAGAAAAAGAAGAGAAAGAAGAAGAAAAAAAGCAAAGATGCAGACAAAGCGAAGAGGTCTGGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468257 lncRNA downstream 102417 4822041 ~ 4823551 (-) True G407526
TU468182 lncRNA downstream 221167 4704124 ~ 4704801 (-) True G407475
TU468184 lncRNA downstream 247740 4678018 ~ 4678228 (-) True G407477
TU468183 lncRNA downstream 248522 4677110 ~ 4677446 (-) True G407476
TU468172 lncRNA downstream 288543 4636610 ~ 4637425 (-) True G407467
TU468295 lncRNA upstream 10873 4939691 ~ 4939939 (-) True G407562
TU468297 lncRNA upstream 27280 4956098 ~ 4956365 (-) True G407564
TU468298 lncRNA upstream 29169 4957987 ~ 4996909 (-) True G407565
TU468329 lncRNA upstream 156576 5085394 ~ 5182362 (-) False G407591
TU468330 lncRNA upstream 156576 5085394 ~ 5111234 (-) True G407591
CI01000299_04861862_04862244.mRNA mRNA downstream 63375 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04741460_04746667.mRNA mRNA downstream 179301 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04708767_04714088.mRNA mRNA downstream 211880 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04658984_04668843.mRNA mRNA downstream 256946 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04645836_04651938.mRNA mRNA downstream 274030 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_05379545_05381902.mRNA mRNA upstream 450331 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_05419449_05423414.mRNA mRNA upstream 490585 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
CI01000299_05428160_05443433.mRNA mRNA upstream 498843 5427661 ~ 5443433 (-) False CI01000299_05428160_05443433
CI01000299_05457285_05462908.mRNA mRNA upstream 528289 5457107 ~ 5463491 (-) False CI01000299_05457285_05462908
CI01000299_05466693_05471714.mRNA mRNA upstream 536824 5465642 ~ 5471987 (-) True CI01000299_05466693_05471714
TU468104 other downstream 375247 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 761644 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2907918 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 3044980 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 3265968 1659655 ~ 1660000 (-) True G404784
TU468421 other upstream 512519 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 889751 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 899018 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1603183 6532144 ~ 6534655 (-) True G407899

Expression Profile