RNA id: TU468295


Basic Information

Item Value
RNA id TU468295
length 249
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G407562
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4939691 ~ 4939939 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAACATGAATTTTTCAAATAGTTAAGAGAGTTAGTTACTTTGCTTCATGACCATGTGGTCCTTTGCAGGTGTCTGAATGATGTCACATCCTGTCACATGATATTGACCGCATGACTTGATCCAAAATGGTCCCTTTATATTGGTTACTCCGAATGACATCAATGAAATTAATTTTTCCAGACATTCTTTCTCATAACAAAGCAATGACTTCTACACATAATTTGAATACCATTTTACACTATGTTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468257 lncRNA downstream 116140 4822041 ~ 4823551 (-) True G407526
TU468182 lncRNA downstream 234890 4704124 ~ 4704801 (-) True G407475
TU468184 lncRNA downstream 261463 4678018 ~ 4678228 (-) True G407477
TU468183 lncRNA downstream 262245 4677110 ~ 4677446 (-) True G407476
TU468172 lncRNA downstream 302266 4636610 ~ 4637425 (-) True G407467
TU468297 lncRNA upstream 16159 4956098 ~ 4956365 (-) True G407564
TU468298 lncRNA upstream 18048 4957987 ~ 4996909 (-) True G407565
TU468329 lncRNA upstream 145455 5085394 ~ 5182362 (-) False G407591
TU468330 lncRNA upstream 145455 5085394 ~ 5111234 (-) True G407591
TU468426 lncRNA upstream 473395 5413334 ~ 5418371 (-) True G407669
CI01000299_04913779_04927715.mRNA mRNA downstream 11976 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_04861862_04862244.mRNA mRNA downstream 77098 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04741460_04746667.mRNA mRNA downstream 193024 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04708767_04714088.mRNA mRNA downstream 225603 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04658984_04668843.mRNA mRNA downstream 270669 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_05379545_05381902.mRNA mRNA upstream 439210 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_05419449_05423414.mRNA mRNA upstream 479464 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
CI01000299_05428160_05443433.mRNA mRNA upstream 487722 5427661 ~ 5443433 (-) False CI01000299_05428160_05443433
CI01000299_05457285_05462908.mRNA mRNA upstream 517168 5457107 ~ 5463491 (-) False CI01000299_05457285_05462908
CI01000299_05466693_05471714.mRNA mRNA upstream 525703 5465642 ~ 5471987 (-) True CI01000299_05466693_05471714
TU468235 other downstream 10873 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 388970 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 775367 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2921641 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 3058703 1855639 ~ 1880988 (-) True G404976
TU468421 other upstream 501398 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 878630 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 887897 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1592062 6532144 ~ 6534655 (-) True G407899

Expression Profile