RNA id: TU468500


Basic Information

Item Value
RNA id TU468500
length 224
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G407734
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5552628 ~ 5554845 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGTCAAATTTGCCCCTATTTGGGTGTGAGCAAAAACACGCCATTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCCGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468429 lncRNA downstream 89456 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468426 lncRNA downstream 134257 5413334 ~ 5418371 (-) True G407669
TU468329 lncRNA downstream 370266 5085394 ~ 5182362 (-) False G407591
TU468330 lncRNA downstream 441394 5085394 ~ 5111234 (-) True G407591
TU468298 lncRNA downstream 555719 4957987 ~ 4996909 (-) True G407565
TU468538 lncRNA upstream 79995 5634840 ~ 5639866 (-) True G407764
TU468628 lncRNA upstream 219404 5774249 ~ 5775541 (-) True G407848
TU468580 lncRNA upstream 266730 5821575 ~ 5821591 (-) True G407801
TU468639 lncRNA upstream 374794 5929639 ~ 5930546 (-) True G407858
TU468606 lncRNA upstream 390530 5945375 ~ 5946025 (-) True G407827
CI01000299_05512316_05521322.mRNA mRNA downstream 31306 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05478688_05502027.mRNA mRNA downstream 49360 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
CI01000299_05466693_05471714.mRNA mRNA downstream 80641 5465642 ~ 5471987 (-) True CI01000299_05466693_05471714
CI01000299_05457285_05462908.mRNA mRNA downstream 89137 5457107 ~ 5463491 (-) False CI01000299_05457285_05462908
CI01000299_05428160_05443433.mRNA mRNA downstream 109195 5427661 ~ 5443433 (-) False CI01000299_05428160_05443433
CI01000299_05602070_05604608.mRNA mRNA upstream 47138 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
CI01000299_05739937_05770480.mRNA mRNA upstream 184963 5739808 ~ 5770807 (-) True CI01000299_05739937_05770480
CI01000299_05802706_05815472.mRNA mRNA upstream 247659 5802504 ~ 5815472 (-) True CI01000299_05802706_05815472
CI01000299_05818562_05822413.mRNA mRNA upstream 263561 5818406 ~ 5823867 (-) False CI01000299_05818562_05822413
CI01000299_05826769_05831144.mRNA mRNA upstream 271121 5825966 ~ 5831312 (-) False CI01000299_05826769_05831144
TU468421 other downstream 96520 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 623810 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1001907 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1388304 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3534578 2017687 ~ 2018050 (-) True G405053
TU468578 other upstream 263724 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 272991 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 977156 6532144 ~ 6534655 (-) True G407899

Expression Profile