RNA id: TCONS_00020655


Basic Information

Item Value
RNA id TCONS_00020655
length 1886
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_010529
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13810018 ~ 13818071 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGGCGTTTATGCACGTTGTCCCGGTAGTACACTATGAGTCATTTGTGGCAGATGATGTCATCCTGTACATGTTAACATTTAAACTAACCAGTCAACAAGCTAAGTTGTGTGATACTTTCTCGGGTTCTTCGAGTTGAAGCTCTGTTGAAGCTGTCAGACATGGAGATTGAGGAAGAGACAACTCGGGGAAACCCCACTGAGGAGTCTGATCAACAGATCCAGCCAGATGAGATTAAACAAGAAACTGGCCCAAATATTTGCCAGCACTTCCTCATGGGCAGATGTCATTTTGGAGACAGATGTCGTTTGTCTCACAGTGTGCTTGACGTCCCACAAACCACAAACTCCGAGAAAGACGATACAGCCGTCACAGAAAAGCAGAGCAAGAGCCgaaaaaatgggaaaaaatgtCACGCAGACATACAGCATGAAAAGATTGAGAAAAAAGGATCTAAGAAGAAGCCACGGATGCGTACAGCTGATGAAGTCATCTCCAGAATCATCTGGGATGCATCAGTGGACCCTGATGATTTTATAGTTGGCCACCTAGACCGCTTTCTAGGAGTGCTGGAACGCCCCTTCTCTGATTTCTCATGGGACACTCAGGTGTGTGACTGTGACTTCTCTGAAGAGCTGGCACTCCCTCGCCATAGGATCCAGTATTTCAGCTACAAAGGCCAGCGGGTGTGGGATAGAGACAGTCGCACTGATCGGGTCTTTGGCTCAACAGGCCAGACTATTTTGCCTCCTTTTTGTGGTGAAAATCAACAACAAGACAATCTAACATCTGACACTGGACAACAAGAAGAATCCACCAATGCAGCAGATGTTTCCACTGACCCTGATCAATCGACTGAATTATCTGAAGTACAGGATGATGTTGCATCTGTAATAACaccatcaaaaaacaaacaatcacagGGAGACGCCCTAAATCACTCAGCAAATGAAAACGCAGAGGAAGAAACCAAAGACCACATCCTACTCTCCCAAACAGAATCTGCACCAGAAGGCGAAAACACAGCAACTGCCGAAGATCCTACTTTAAATCATTTGGCTGGAAATCTGACTATCACTCAAAAAGATGAACAAGCGGAAATAGCGGAGGAATGGAAGGACAGCTGGGATGGAGTGAGTGGCTCAGAAGCAGAACTAGCGTCGGCCATCCTGCCACAACCACAGTCCAAACGGCCACCACCACGCAAGCCCACCCACTTCATCTGCTTCCGTGTGGATTCTCCCGCTGCTCTCCAGGCCTTCCAGCGAGTTCAGAGAAAAGTTCTGTCCACCCTCCCTCAGTCAGAGCCAATGTGGGTTAATCCGGCAACTTTACACGTCACCCTCTCCTTACTTGTGCTCAACAGTGCAGAGGAGGTCAGTGCTGCCGCTGAGCTCATGCGCACCATAGTCCGAAGCTCCCACAAACCTCCAATTTCCGTGACGTTCGCACCTAAACTGAAGCACTTTAATGGAACCGTTCTCCACGTAGTCCCACAGCCGTCCTCAGATGTGCAGAGTCTGAATTCGCCCCTTCAAGAAGCCTTCAAAGATAAAGGTTGGCTTCACCGGCATTCCCGATGCCCGTCGTACCATCTCACACTGGCCAAAGTGAAGAGGGAGCCCAAGGCTGAGAAGATGTTTGAAGGGATCGGGACTGTGAAATTGGCTAAAGATGTCAACTTTGGAAAGCTGGAAGTAAATAAGCTGTACCTTTGCGTGAAAGGTCAGAGAAACACGGAGAGTGGGTTCTATCAGGTTGTATGTGCCGTGCAGCTGCCCAATGTGTAGTGCCTGGATTTGTCACCTAAGCTGATTTTACCTACATCAAATACTTGATGTGTTTTTACTTAAATAAACAGTCTCATGATTCAAGACTTGAAGGCA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-607 Predicted to enable metal ion binding activity. Orthologous to human LENG9 (leukocyte receptor cluster member 9).

Ensembl:

ensembl_id ENSDART00000144856

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020643 lncRNA downstream 245743 13556921 ~ 13564275 (-) True XLOC_010521
TCONS_00021788 lncRNA downstream 258691 13545293 ~ 13551327 (-) True XLOC_010520
TCONS_00020642 lncRNA downstream 267619 13538994 ~ 13542399 (-) True XLOC_010519
TCONS_00022130 lncRNA downstream 329646 13440737 ~ 13480372 (-) True XLOC_010517
TCONS_00020625 lncRNA downstream 1121065 12674230 ~ 12688953 (-) True XLOC_010509
TCONS_00020658 lncRNA upstream 39601 13857672 ~ 13860263 (-) False XLOC_010530
TCONS_00020659 lncRNA upstream 39601 13857672 ~ 13860564 (-) True XLOC_010530
TCONS_00022131 lncRNA upstream 40836 13858907 ~ 13859312 (-) True XLOC_010531
TCONS_00022132 lncRNA upstream 158309 13976380 ~ 14005609 (-) True XLOC_010536
TCONS_00022133 lncRNA upstream 270260 14088331 ~ 14090702 (-) True XLOC_010539
TCONS_00020654 mRNA downstream 20110 13714063 ~ 13789908 (-) True XLOC_010528
TCONS_00020653 mRNA downstream 79866 13714058 ~ 13730152 (-) False XLOC_010528
TCONS_00020652 mRNA downstream 129326 13672768 ~ 13680692 (-) True XLOC_010527
TCONS_00020650 mRNA downstream 147504 13636704 ~ 13662514 (-) True XLOC_010525
TCONS_00020648 mRNA downstream 186090 13616239 ~ 13623928 (-) False XLOC_010524
TCONS_00020660 mRNA upstream 57796 13875867 ~ 13881156 (-) False XLOC_010532
TCONS_00020661 mRNA upstream 58489 13876560 ~ 13881139 (-) False XLOC_010532
TCONS_00020662 mRNA upstream 58604 13876675 ~ 13881156 (-) True XLOC_010532
TCONS_00020663 mRNA upstream 93621 13911692 ~ 13921589 (-) True XLOC_010533
TCONS_00020664 mRNA upstream 137515 13955586 ~ 13965518 (-) True XLOC_010534
TCONS_00020651 other downstream 138799 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020641 other downstream 267558 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020613 other downstream 1315601 12474861 ~ 12494417 (-) False XLOC_010505
TCONS_00020606 other downstream 1556547 12253415 ~ 12253471 (-) True XLOC_010500
TCONS_00020605 other downstream 1559695 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020665 other upstream 139685 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020674 other upstream 567249 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020689 other upstream 1995435 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020706 other upstream 2755343 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 2859637 16677708 ~ 16692267 (-) True XLOC_010571

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_05871353_05874812.mRNA True 1440 mRNA 0.47 3 CI01000016 5871184 ~ 5874812 (-)