RNA id: TCONS_00033209


Basic Information

Item Value
RNA id TCONS_00033209
length 1567
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_017029
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 59255193 ~ 59265537 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTCGGTGTTGGGTGTGTTGAGTCTGTGTCTCTGTATGAGCAGTAAAATGGCAGAATCCAGTGTTTCTTTGGCTCATCGTGAGTTCAGCTGTTCGGTGTGTCTGGATCTACTAAAGGATCCAGTGGCCATTCCGTGTGGACACAGTTACTGTATGAGCTGCATCACAGACTGCTGGAATCAGGAGGATCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGCtggagaaactgcagaagagcaaACTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTACTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCACACTCATTTTCAGCGCCATCAACAACTGAATCCGGGAAATCGACACAAAGTGACTGAAGCCACTCATAAACTGCAGGAGATGATCTGTCCTCAACACAAGAAACTCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATTTGTTATCTGTGTTTGCTGGATCAACACAAACACCATGACACTGTTTCAGCTGCAGCAGAGAGGACTGAACTACAGAGTCGGCTGAGGGAAACCCAGAGCAGATTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGcGCTCTGCACAGGCCGCAGTGGACCACACCGAGAGGATCTTCACTCAGCTCATCTGCTGGATTGAGAGAAGCCGCTCGGAGCTCACGCAGATGATCAGAGATGGAGAAAAGACTGCAGTGAGTGGAGCTGAAGAACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACACACAGAAGATCACATCCATTTCCTCCAGagtttgcagtCTCTCTCTGTCCCTCCTGGATCTACAGACTCATCCAGCTTTATTAGCAGCTCGCAGCTCGCTTTTGATCAACTTGCTGAATCTGTGTCTCGTCTGAGAGACAAACTGCAGCAGTTCTGCACTGAGGAGATGAAGACCATATCTAGAAGAGTGAGCAGCATTAGCATCATTCCCGCTCCTGAACCACAGACCCGTGAGCAGTTCCTCCAGTATTCTCAACAGTTCACTTTGGATCCAAACACAGCGCATACATATCTGGTTCTGTCTGAAGGAAACACAGCGGTGGAAAATAAAGGTTCAGtccagccgtatcctgatcatccagacagatttgattgtTGGCGTCAGGTGTTGtgtagagagagtgtgtgtggacgctctTACTGGGAGCTGGAGTGGAGCGGTGTTGATGTGttaatatcagtgtcatataagagcatcagcagGAAGGGTTCGGGTAATGAGTGTCTGTTTGGACTCAAtgatcagtcctggagtttgtgcTGCTCTGCTGACAGTTTTTCATTCAGGCATAATAATATAAACACTGATCTCCCTAAACCCTCCGTCAGCTCCTCTAGAATAGGAG

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-109 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDART00000146341

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034026 lncRNA downstream 134353 59093307 ~ 59120840 (-) False XLOC_017022
TCONS_00033439 lncRNA downstream 138219 59094437 ~ 59116974 (-) False XLOC_017022
TCONS_00034025 lncRNA downstream 138321 59093307 ~ 59116872 (-) False XLOC_017022
TCONS_00034024 lncRNA downstream 151223 59093307 ~ 59103970 (-) False XLOC_017022
TCONS_00034023 lncRNA downstream 153026 59093307 ~ 59102167 (-) False XLOC_017022
TCONS_00034027 lncRNA upstream 113645 59379166 ~ 59390269 (-) False XLOC_017036
TCONS_00034029 lncRNA upstream 113645 59379166 ~ 59390464 (-) False XLOC_017036
TCONS_00034028 lncRNA upstream 113645 59379166 ~ 59390464 (-) False XLOC_017036
TCONS_00033208 mRNA downstream 7382 59245240 ~ 59247811 (-) True XLOC_017028
TCONS_00033207 mRNA downstream 24082 59227546 ~ 59231111 (-) True XLOC_017027
TCONS_00033206 mRNA downstream 24176 59221948 ~ 59231017 (-) False XLOC_017027
TCONS_00033203 mRNA downstream 49752 59190666 ~ 59205441 (-) False XLOC_017026
TCONS_00033211 mRNA upstream 13320 59278841 ~ 59285085 (-) False XLOC_017030
TCONS_00033212 mRNA upstream 15547 59281068 ~ 59285407 (-) True XLOC_017030
TCONS_00033213 mRNA upstream 29739 59295260 ~ 59303406 (-) False XLOC_017031
TCONS_00033214 mRNA upstream 32121 59297642 ~ 59303338 (-) True XLOC_017031
TCONS_00033215 mRNA upstream 47255 59312776 ~ 59327299 (-) True XLOC_017032
TCONS_00033197 other downstream 152941 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033196 other downstream 216881 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033190 other downstream 385740 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033188 other downstream 618401 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033170 other downstream 1313330 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033216 other upstream 70260 59335781 ~ 59336963 (-) True XLOC_017033
TCONS_00033220 other upstream 116907 59382428 ~ 59390464 (-) True XLOC_017036

Expression Profile

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