Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034699 |
| length | 890 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 5 |
| gene id | XLOC_017462 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 34151670 ~ 34155608 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016477 | cell migration | biological_process |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | biological_process |
| GO:0030833 | regulation of actin filament polymerization | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005885 | Arp2/3 protein complex | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0051015 | actin filament binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040120-7 | Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Orthologous to human ARPC5 (actin related protein 2/3 complex subunit 5). |
| ensembl_id | ENSDART00000152870 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036616 | lncRNA | upstream | 118473 | 34029836 ~ 34033197 (+) | True | XLOC_017460 |
| TCONS_00034689 | lncRNA | upstream | 176378 | 33959570 ~ 33975292 (+) | True | XLOC_017455 |
| TCONS_00034682 | lncRNA | upstream | 405776 | 33745467 ~ 33745894 (+) | True | XLOC_017451 |
| TCONS_00034681 | lncRNA | upstream | 406419 | 33744350 ~ 33745251 (+) | False | XLOC_017451 |
| TCONS_00036615 | lncRNA | upstream | 621639 | 33519785 ~ 33530031 (+) | True | XLOC_017444 |
| TCONS_00036617 | lncRNA | downstream | 171950 | 34326878 ~ 34341183 (+) | False | XLOC_017463 |
| TCONS_00034704 | lncRNA | downstream | 179213 | 34334141 ~ 34337750 (+) | False | XLOC_017463 |
| TCONS_00034705 | lncRNA | downstream | 183397 | 34338325 ~ 34339582 (+) | True | XLOC_017463 |
| TCONS_00034710 | lncRNA | downstream | 237851 | 34392779 ~ 34394003 (+) | True | XLOC_017465 |
| TCONS_00034724 | lncRNA | downstream | 450019 | 34604947 ~ 34608264 (+) | False | XLOC_017470 |
| TCONS_00034697 | mRNA | upstream | 3480 | 34129465 ~ 34148190 (+) | False | XLOC_017461 |
| TCONS_00034698 | mRNA | upstream | 6761 | 34130714 ~ 34144909 (+) | True | XLOC_017461 |
| TCONS_00034696 | mRNA | upstream | 7299 | 34129465 ~ 34144371 (+) | False | XLOC_017461 |
| TCONS_00034694 | mRNA | upstream | 112032 | 34029820 ~ 34039638 (+) | False | XLOC_017460 |
| TCONS_00034695 | mRNA | upstream | 119693 | 34029836 ~ 34031977 (+) | False | XLOC_017460 |
| TCONS_00034702 | mRNA | downstream | 165707 | 34320635 ~ 34333106 (+) | False | XLOC_017463 |
| TCONS_00034703 | mRNA | downstream | 171946 | 34326874 ~ 34341183 (+) | False | XLOC_017463 |
| TCONS_00034706 | mRNA | downstream | 219807 | 34374735 ~ 34379656 (+) | True | XLOC_017464 |
| TCONS_00034707 | mRNA | downstream | 233497 | 34388425 ~ 34399442 (+) | False | XLOC_017465 |
| TCONS_00034708 | mRNA | downstream | 233513 | 34388441 ~ 34393138 (+) | False | XLOC_017465 |
| TCONS_00034653 | other | upstream | 1681216 | 32466886 ~ 32470454 (+) | True | XLOC_017433 |
| TCONS_00034652 | other | upstream | 1719203 | 32408887 ~ 32432467 (+) | True | XLOC_017432 |
| TCONS_00034641 | other | upstream | 2428173 | 31722252 ~ 31723497 (+) | True | XLOC_017426 |
| TCONS_00034640 | other | upstream | 2764499 | 31387055 ~ 31387171 (+) | True | XLOC_017425 |
| TCONS_00034636 | other | upstream | 2928643 | 31217539 ~ 31223027 (+) | True | XLOC_017422 |
| TCONS_00034740 | other | downstream | 788443 | 34943371 ~ 34955260 (+) | True | XLOC_017481 |
| TCONS_00034743 | other | downstream | 907878 | 35062806 ~ 35063981 (+) | True | XLOC_017485 |
| TCONS_00034756 | other | downstream | 1125068 | 35279996 ~ 35288971 (+) | False | XLOC_017488 |
| TCONS_00034760 | other | downstream | 1227510 | 35382438 ~ 35382617 (+) | False | XLOC_017489 |
| TCONS_00034762 | other | downstream | 1267770 | 35422698 ~ 35422827 (+) | True | XLOC_017490 |
