RNA id: TCONS_00034702


Basic Information

Item Value
RNA id TCONS_00034702
length 494
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_017463
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34320635 ~ 34341183 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGAGGCTGTGTCTGAAACTTAAGGAAGCTGAGATGCTGCCCAGTCAATGAATGACTAAACAACAGACAACGTTTTATGCAGACAGTAAAGGTTAGGCATAACAAGTTATAATGCACAAACAACACAGAAAAGGTTTGAGTCTATAGCCAACGGGACACTCGAGGACTTGATTGCAGTCACTCTAAGCCTGAGAGTTTGAGTCACCTCTGACCCCCTGCTGCTGTGCCCACCGGTTGCCTGGCATTGCCTTTTCCATCCACTAAGTGGTGAAGCAAGACCTAGGCATTCCCATTCCTGGCTCTACTTCACCCGTGCCTTTTACGGCTTTCCCCAAGTAATCTATCTCTCCCAGACGTCATCCAATATCAGgCTTAATTTCCAAAATGATTCCCAACGGATATTTGATCTTTGAGGACGAAAGTTTCCTGGATTCCACTGTGGCCAAGATGAATGCCCTTAGAAAGAACGGCCAGTTCTGTGATGTGAGACTT

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-031222-2 Predicted to be located in cytoplasm; cytoskeleton; and nucleus. Is expressed in several structures, including ectoderm; pronephric duct; pronephric mesoderm; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in immunodeficiency 70. Orthologous to human IVNS1ABP (influenza virus NS1A binding protein).

Ensembl:

ensembl_id ENSDART00000153207

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036616 lncRNA upstream 287438 34029836 ~ 34033197 (+) True XLOC_017460
TCONS_00034689 lncRNA upstream 345343 33959570 ~ 33975292 (+) True XLOC_017455
TCONS_00034682 lncRNA upstream 574741 33745467 ~ 33745894 (+) True XLOC_017451
TCONS_00034681 lncRNA upstream 575384 33744350 ~ 33745251 (+) False XLOC_017451
TCONS_00036615 lncRNA upstream 790604 33519785 ~ 33530031 (+) True XLOC_017444
TCONS_00034704 lncRNA downstream 1035 34334141 ~ 34337750 (+) False XLOC_017463
TCONS_00034705 lncRNA downstream 5219 34338325 ~ 34339582 (+) True XLOC_017463
TCONS_00034710 lncRNA downstream 59673 34392779 ~ 34394003 (+) True XLOC_017465
TCONS_00034724 lncRNA downstream 271841 34604947 ~ 34608264 (+) False XLOC_017470
TCONS_00034726 lncRNA downstream 328449 34661555 ~ 34663198 (+) True XLOC_017471
TCONS_00034700 mRNA upstream 165027 34151685 ~ 34155608 (+) False XLOC_017462
TCONS_00034701 mRNA upstream 165040 34151686 ~ 34155595 (+) True XLOC_017462
TCONS_00034699 mRNA upstream 165707 34151670 ~ 34154928 (+) False XLOC_017462
TCONS_00034697 mRNA upstream 172445 34129465 ~ 34148190 (+) False XLOC_017461
TCONS_00034698 mRNA upstream 175726 34130714 ~ 34144909 (+) True XLOC_017461
TCONS_00034706 mRNA downstream 41629 34374735 ~ 34379656 (+) True XLOC_017464
TCONS_00034707 mRNA downstream 55319 34388425 ~ 34399442 (+) False XLOC_017465
TCONS_00034708 mRNA downstream 55335 34388441 ~ 34393138 (+) False XLOC_017465
TCONS_00034709 mRNA downstream 57090 34390196 ~ 34399004 (+) False XLOC_017465
TCONS_00034711 mRNA downstream 67609 34400715 ~ 34419523 (+) True XLOC_017466
TCONS_00034653 other upstream 1850181 32466886 ~ 32470454 (+) True XLOC_017433
TCONS_00034652 other upstream 1888168 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034641 other upstream 2597138 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034640 other upstream 2933464 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034636 other upstream 3097608 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034740 other downstream 610265 34943371 ~ 34955260 (+) True XLOC_017481
TCONS_00034743 other downstream 729700 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034756 other downstream 946890 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034760 other downstream 1049332 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034762 other downstream 1089592 35422698 ~ 35422827 (+) True XLOC_017490

Expression Profile

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