Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034708 |
| length | 641 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 7 |
| gene id | XLOC_017465 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 34388425 ~ 34399442 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0002940 | tRNA N2-guanine methylation | biological_process |
| GO:0008033 | tRNA processing | biological_process |
| GO:0032259 | methylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0000049 | tRNA binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | molecular_function |
| GO:0008168 | methyltransferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041014-189 | Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to be involved in tRNA N2-guanine methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be active in nucleus. Orthologous to human TRMT1L (tRNA methyltransferase 1 like). |
| ensembl_id | ENSDART00000139648 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036617 | lncRNA | upstream | 47258 | 34326878 ~ 34341183 (+) | False | XLOC_017463 |
| TCONS_00034705 | lncRNA | upstream | 48859 | 34338325 ~ 34339582 (+) | True | XLOC_017463 |
| TCONS_00034704 | lncRNA | upstream | 50691 | 34334141 ~ 34337750 (+) | False | XLOC_017463 |
| TCONS_00036616 | lncRNA | upstream | 355244 | 34029836 ~ 34033197 (+) | True | XLOC_017460 |
| TCONS_00034689 | lncRNA | upstream | 413149 | 33959570 ~ 33975292 (+) | True | XLOC_017455 |
| TCONS_00034724 | lncRNA | downstream | 211809 | 34604947 ~ 34608264 (+) | False | XLOC_017470 |
| TCONS_00034726 | lncRNA | downstream | 268417 | 34661555 ~ 34663198 (+) | True | XLOC_017471 |
| TCONS_00034727 | lncRNA | downstream | 270184 | 34663322 ~ 34664762 (+) | True | XLOC_017472 |
| TCONS_00036618 | lncRNA | downstream | 368605 | 34761743 ~ 34766443 (+) | True | XLOC_017475 |
| TCONS_00036619 | lncRNA | downstream | 371312 | 34764450 ~ 34765817 (+) | True | XLOC_017476 |
| TCONS_00034706 | mRNA | upstream | 8785 | 34374735 ~ 34379656 (+) | True | XLOC_017464 |
| TCONS_00034703 | mRNA | upstream | 47258 | 34326874 ~ 34341183 (+) | False | XLOC_017463 |
| TCONS_00034702 | mRNA | upstream | 55335 | 34320635 ~ 34333106 (+) | False | XLOC_017463 |
| TCONS_00034700 | mRNA | upstream | 232833 | 34151685 ~ 34155608 (+) | False | XLOC_017462 |
| TCONS_00034711 | mRNA | downstream | 7577 | 34400715 ~ 34419523 (+) | True | XLOC_017466 |
| TCONS_00034712 | mRNA | downstream | 62507 | 34455645 ~ 34466483 (+) | True | XLOC_017467 |
| TCONS_00034713 | mRNA | downstream | 108014 | 34501152 ~ 34507495 (+) | False | XLOC_017468 |
| TCONS_00034714 | mRNA | downstream | 109468 | 34502606 ~ 34504116 (+) | True | XLOC_017468 |
| TCONS_00034715 | mRNA | downstream | 118540 | 34511678 ~ 34521041 (+) | False | XLOC_017469 |
| TCONS_00034653 | other | upstream | 1917987 | 32466886 ~ 32470454 (+) | True | XLOC_017433 |
| TCONS_00034652 | other | upstream | 1955974 | 32408887 ~ 32432467 (+) | True | XLOC_017432 |
| TCONS_00034641 | other | upstream | 2664944 | 31722252 ~ 31723497 (+) | True | XLOC_017426 |
| TCONS_00034640 | other | upstream | 3001270 | 31387055 ~ 31387171 (+) | True | XLOC_017425 |
| TCONS_00034636 | other | upstream | 3165414 | 31217539 ~ 31223027 (+) | True | XLOC_017422 |
| TCONS_00034740 | other | downstream | 550233 | 34943371 ~ 34955260 (+) | True | XLOC_017481 |
| TCONS_00034743 | other | downstream | 669668 | 35062806 ~ 35063981 (+) | True | XLOC_017485 |
| TCONS_00034756 | other | downstream | 886858 | 35279996 ~ 35288971 (+) | False | XLOC_017488 |
| TCONS_00034760 | other | downstream | 989300 | 35382438 ~ 35382617 (+) | False | XLOC_017489 |
| TCONS_00034762 | other | downstream | 1029560 | 35422698 ~ 35422827 (+) | True | XLOC_017490 |
