RNA id: TCONS_00004194


Basic Information

Item Value
RNA id TCONS_00004194
length 9265
RNA type mRNA
GC content 0.45
exon number 30
gene id XLOC_002180
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26871486 ~ 26925511 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGCATAACCCTTCCTACCTACTCCTGCACTTCTTCCTCCACTTTCATCACTTCATTGTCAGACagctgcttttaaaaacacttcatCTCTTGACGCTCCATGACGCGAAAGATGAAGTCCTTCCTCTCTATTTCTTACGCACAGATGTTGCTTTTTGCACCAAGTCAACTAATTGTCATACACTGACAGTCTGCTCTGGTGTGTGTAACGTGATGCAGTAGTTTCCGTAAATGGTCTTTACTCGATGGCGACAGTTCGGTGGGACTGAGCCGCATGAGCTGCTGCTTGTGCTCCTCAGCAAGGACATTTCACTTCGCGAGCCACTTGACAGCCATATATTCGAGtagtttttgtactttttgtgCAGTGGCGGGACGGTAGAAAGCTTATTTCCATGCGCCTGACTTCATTCGCGGATACTGCATTTCCTACAGAAGAATGACTTCGGTGTGGAAAAGGTTACAAAGAGTTGGCAAAAAAGCCACCAAATTTCAGTTCGTGGCTTCGTATCAAGAACTTGTCCTGGAATGTACAAAGAAATGGCAACCAGACAAACTGAGAGTGGTGTGGACCAGGAGGAACAGACGCATTTGCTCCAAGCTTCATTCATGGCAGCCAGGCATCAAAAATCCTTACAGGGGAATGGTGGTTTGGCCCGTTCCCGAGAATGTGGACATTACAGTCACACTCTACAGGgatCCACATGCAGATGAGTTTGAAGACAAAGAGTGGACATTTTTTATTGAGAATGAGACGGCAAAGGGCAGTCGGAAAGTGTTGGCATCTGTGGACTTGAACATGAAGAAGTTTGCCAGTGCCACACACTCGCAGACAGACCTGATGCTCAAAATGAAGCCTCTGTCAGTGAAAGTGGTGGAGGCCACACTGAAGCTGTCTTTATCATGTGTGTTCCTCAAGGAGGGGAAAGCTACGGATGAGGACATGCAGAGTCTCGCCAGTCTGATGAGTGTAAAGCCAACAGACATTGGGAACCTGGACGACTTTAATGAGAGCGATGAAGAAGAGGATAAGAGATCCAGCACTGGTATCAATCTCAGCACTGCAGCTCCAGCACCTCACCTTTCTCTTCGATCAACACGCTTCCAAGAAAAGAGACCTGCGTCTTTTAAGAGCCCTTCAGCAGCAGTCAGTGGTAAAGAGAGGCCTTCTGCTGGCCTCCTCTCCCGACCAGCGTCTACCACTGTCCATAAACCTGACCTACCATCACGTCCACCTTTACCCACTCCACCTAGTCCAACCCCTCGCACCATGCCCTCACCCGCCCGCACCAGACCTCCACGTCCACCACCTATTGCCCTGCCACAGGCTCTACCTGACCCCCACACAGAGCAAAACACTGCCGGTTCACTCCCTCCAGCATTGCCTAAAATCTTCCAGCCCTCCCCTGGCTCAGCTCCAGTGTCTTTCCCAAGAAGGCTGTCGGGCTCTGAGGGGCCTCCAGAGGGCCCAGTGACCTCTGATTATCCTCTGCTCAAACTCCCTCGGGCTTCTCTGTCTTCTCCATCGGATCCTTTCCTCCCTCAGCCTCCCTCTCCTCCTGATGTACTTGTGAAAGATTCTTTTGGAGCACCTCGTGCCAATGTTTTTAAGCCCAAGATTGTGCCCGGTGCTCGCCCTGTTTCCCCCACGCCAGTCCCCTTCCTCGAGCCCAAAACCTCCTCGCTCTCGCTCTCCGACACGCTTAAGCATCCATCTGCTGGCACTGTGCCAGatcTAAATGAACAGATGACGGCAGTGTCTGCATCTCCTTTTTTCACTGTCTCTCTAAATGAATCTGTGACCCCTGTTCCTCTGCTAAGCAAACCAGACCTTGAAGCCTTGTGCGAAACCCGTTATTCTTCTGGTCAATTTCCCAAGCCACCTTCACCTTCCTCCCTCTCCTTCCCACTGCCAGTCACTTTTACCCCAGCAGTTTCTTCCTCTTCTCTTCCTATCTTGTCCACTGATGCCCTCGCATCTGCCCCCTGCTGTTCACCACTATCTTCTTCGGCTCAGTCAGATTTACCCAGAGAGCTCAACACACTTACAGAGGAGGATCAAACAAATCCATTTCTACAAGATATTCTTGCAGAAGAAGCGAAGAACTCTGAACCTAAAAACGAGCAGCATCACTCATCTCGGACCGTCAGCAGCATTAGCATTGCCAATCAACAAGTATCTTCTTCGCTCTCTCAACCTGAAACCAACAGCACAGAAAGAAAAGAGCTCAGACCTGCCATGGCTGTAAAAAGTCTTGGTCTTGAATCATCATCAGGAGGACAGCCTGTGGAAACTTTCGGATCTGAGGAACTGGACATTAGGACTCTTCCTTCTCCTCATCCATTCTCAAGTCCAGCAACAAAACCTCTTTCATCTGCAGTTTTCACTCAAATGGAGAAAAAACAGCCAGTTTTTATTGCAGAGAAACCACCATTGGCTGAGGAAGAGCCGGATTTTAAAGTAGCTGATTATGATAAAGTGATCATGACCTCTCAGCCTCTCATCAAAGACGTTACATTTGAGAAACAGCCTGAGAAAGAGCCCCTCAGAACTGACAGTGAAAAACAAATGCAGTCCAGTCAGGTTCAAACTTTTTCAATAACCACTGATGACTTACTGAAGAAAACAGAAAGCACAAAAAATGACTCAGCAGAGGAAGTTGTTTTGAAAGAGGAACCGAATGAACTGAAGGGTACTTTACTTTGTGCCGACCTCAACAAGTCAGACGAGGACAAAATCATCAAGAAATTTGCCTCCGCTTTGGTTACCAATTTAGAGCAAAATGCTCCCAACGTATTATCTAGTTCATCACAAGATGATCATAAGGAAAAGACTCAAGTGTTGATGGAAGAAGTCCTTACATCTAATACCAGTGGGAATTTGAGAGAAAAACAATCCCATAAGGATGATCTGGACAACAATTTAATAATTGAGGAAAGTCAAAATGAAATGGCCTTCACTAGACCTGAAAGTCCTAGCATTAGTCTCCATCCGGCTGCCCATATTAAATCAGATCAGCCTAAAGAGCTTCCTCTCATTCATTCCCAATCCCTGGACCTCCAAATTCTTAAATGCATCCCAGAACAAAGTCCAGCAGTCAGTGAACCTGCCAAACCAGAGCTGATTGTGAAGGAGTCAGACAACACAGTGTTGGAGGTCCCGTCAAATGCCCAAGCAGAAGTACCAATCTGGAGTTGTCTGGAAGAGAAAGTACAAGAACAAGAGAATACATTGAGAGATGAGGAGATACATGAGCACAAAACACCTCAGAAAATGCCAAAGTTAGAAACTAAATCCTCAAAAAAGTCTGTAGAATCAGGAGATGAAAAAGCAGTTTCTGAGGATGCTGAGAATTGTATTTTAAGTGAACCAGTGTCCCAGCAGCCACTACCCTCCATTGTCCTTAAACCACAGCCATCTGAGTCTGTTAAGGAAAAGAAAATAGAAGCTGTTAAAGTCAGTATACCGGTCCGTATGAAGCCTGCGCTTCCTGTGATCTCCCCTGCTGCTTCTGTAAAGGGAAAGGACAACAGGACATCGCTACATCTGGAGGAACTTTGCCCTATGACGCCCAACCAGTCTCTGGATACAGAGTCCTACGGAAATAGTTTAAGGAAAAAGGTCACGTTTGAAGCAGAAAGTGTGTTGTGGGCCACAGTAGAggagaaaacaaaagaaaacagtgATGAGGGTGTAAGCTTGGGCGAGTTGAAACTGGAGAAGGAGGTTCTGGATAAGGGCCAACTTGGTCAGAAAAAATCAGAAATCAAGTCTAAGGAGCAAGATGATTCCTTCATTTCCACTCATAAAAACACTAACCAAGAATGCCAGGAAATAGAAAAGACAATAGACAAGGATGATTCAGATGATAAGCAGATGGTGAAAACCGACAGTGAGACTATTTGCACAACTCAAGATGAACTTGAAGATGACCTGAAGTCTGTAGATGTGTGTTCAGAGACCCAACTCAGCCATGACCTGGATGTGAAAACTGACAAGTACCTGGACTCAAGCAAACAGGAGCATGACTCTGATCAAGAGGATGTATCTGTAGGCTTCATACGGGGGATTTTTGGTGTCCTTTATAAAGGTTATGAGACTGTGACGTCTATACTACAGCAGCCAAGCGAAGCAGAAACAGATGTTCAAGATGACCCAATCTTGGACAACCAAGATGGACCCGTGGTTGAAATTCTTCCTCCCGAGGCCTTCTGCGACACCAAAATTAAGCATGCAACTGTCGATGAGCCTCAGGAATACCTGTTCAAGGATTTGTTGCCATCTGGCGAGTtacagatagatatacagacCTCTGAGCCTGTGGCCATGAGCCTGGTGGAGTGCCTAAAACTGGCTGCCAGAGAAACTCAAACCAGATCCGTTAATGATAAAGAAAGCCCTTCAGAACAGAAAACAACAAATGTGAAGTCTCAAATAATGACGCCTAAACAAAGCATGACAGTAGATTTGAAACCTGAAATTGTGGTGTCAAATGAAGAAAAGAAACCTCTGGAAACCACACAAGAAGACATAACTGTTAAGGAAGAAGTGCAAAACATCAGCATTGTGGAAACAGATGGTTTGGTGGCCAACGTTAAGGAGatacaaaaacaagaaaactcaGGAAGAAATGAACACGAGAAATTTCAGCACAGCAAGAAAACAGCAGTGGATTTAAGGCCTTTAATGGCGTCAGAGGGGTCACAGGAAGAGCTGGAGTTTGAAATGGGTCAGGAAGACTTAGGGACAGTGTGGTCTGCTGATCTATATATGGACGGAGGACCAGACGAATCATCAATACCACCAACACTAAGAGATTtcccacacacacaaatgctgaaATCACCTCAGACTGTCTTTCCACCAGAATCAACATTGTCAGCATTAAAAGACACTGCACCAATGGAGGCAATTACCCAATCTGCAAGCAAAGTTGACCCTCCCTACCAAGACGAGAGTACACAGTCTCTACCGCCAGTTCCTTTACAGGAAGTCGGCCTTGATGCCATAAATCCTGATGTTAGTTTTGCAGCCGCTCCACAGTGCGATGAAAGGCTAACCACTTTATCACACATAACTACAGAAACAGCAGCTGCAAACACTGAAATATGCAAAGATAATGCAGGAGAGACAAGTAGTAATAACTTGTCACCACTTGAGGGCAACATTACCAACACTACATGTATAATCAACAATGAAATTGAAAAACAAAGCATCATCAAGGCATCAGAAAGCTTAATTGTAGACGCCTCAGAAAGACCACAAGATGTAAACGTCAATGAGGATGTTTCTCCAAGAAGCTCAGTGGTTCCTTGGCCATTTCCTTCTCCTAAACTTGAAAGACACCTAGAGACTTCTAAAAGCACAGATAGTTCAAGTGTAAAGAATGATGACCAGTCGGAGGAGAGTGTTCTGTTAGAAAAGATCCGTCAAATGGCAGAAGATGAAATGGCTAAACCAGCATCTACTCCCCCACGTGCTAAAATACGCTTGATACCCTGCAAATCTGATTTCGAACTCCCTCCAACTCCACCTCTACAACTTAAATCCAGCATGAAAACGCCCGTGGATGAGATGCAGTTACATTTAGATCAGACAAAAATCACAAATCCACCTTCAGTGATTTTCCAGGAGCAAACAGACGAGGAGATTAATAACAGTCAGTCTCAGACTTCATCTGCACCAATGGAGAGTTTTACGTTAGATGACAGACAGAAAGAGGAAAGTGCTAATAATGCGGTTTTAGATGACAACGTCCTGTTAAACAAGCGAGAACCAAACATCCAGCTGGAATGCGTAGCAGCTGAAGGGGAGCGCCAAGATACGTCAGCTGCTGAGCCCACAGAGAACGCAGAAACACAAGCTAAAACTGAGAAAGAGGAACAACTAGATTTAAGTGTTGATAGAAGTGAAGAGACTCAAATGGAGCTGGATAAACCACCATCTCCTGTGCCTGATGAATTGAATAGTCATCCTCAGGAAAAAGAGTCCTCTAGTTTGACCCAGGAACCTAAAGGGGTTGAGACACCATCTAAAAGCCCAGACAGTGTGCAGGTCAATGGCCAGACCACCATAGAAGCGTCGCATGTCATCGTGCCTCCAATGCgcagtaaaaagaaaataatccCACCACCAATGGATCTCACACTGGTAAAATCAATAGATGAGTCAAACAGAGACGGCTCAGCAGTGCCTGCGTGGAGTtatGCCAGTCCATTGCCCAGTCCTGGTCTGGTGACCTCCACTCAGTCTTTGCTGGAATGGTGTCAAGAGATCACAAAGAAGTATAGAGGTGTAAAAATCACAAACTTCAGCACATCTTGGCGTAACGGCCTGGCTTTCTGTGCCATCTTACATCACTTCCACCCTGAGATAATTAACTTTGACTCATTGGAGCCTCACAACATaaagcaaaacaacaaaactGCTTTTGATGGTTTTGCTTCACTGGGCATCTCTCGTCTGCTGGAGCCCTCAGACATGGTGCTTCTCTCTGTCCCGGACCGTCTCATCGTCATGACGTACCTCAGCCAAATCCGCACCCACTTCACGGGACAGGAGCTGAGCGTCCTACAGATCGAGCAGAACAATAGTCAGTCCAGCTACACATTAGCTGGACCAAACCAGCGGCCCGATGTTCAAGCGGCCACCAAATTCTGTGTGGAGAGACTCCAGGCTGGAGCTTTTACTGGAGACAATAACAGTAAAGACTCAATTGGGGAGGAGGAAAGCGAATCCAAGTCAAACGGAGGACTTGTTGCTCCGCCGAGGACTAAGCGGACAGGAAAGGTGGATGGAGAGGAGATAGACGGAGGTGTGCAGACTCCTGTGGCTCCTCCACGACTGAACGCTGCTGCTGTCAGATCAGGGCTCGGACACTTGCGAGATGCAGATCTGGTGAAGAAACGACGGTCGAGGATGAAGAGCGAGTCTATGGACGAGCCTGATTCAAAAGAGATGCTACATGAGTCAGATAAAAGTGAACCAACAGTTGAAGGAACAAATGGCTCAGCAGCTGCTAGAGAAAATGCTGAAGCAGAACCTCAGGATGCAAACCAAGATGCCAAATCAGCAGATTTTGAGACAATGTGTCTGCAGGACACCAATCAGTATGTATTGAGTGAACTTCAGGCTCTGGAAACGGAACAGAAGCACATAGACAGCAGAGCAGCGGTGGTGGAGAAACGCCTGCGAAGACTCATGGAGTCGGGGAGTGATAAAGATGAAGAGGAGAAGCTAATTCAGGAGTGGTTTACTCTGGTCAACAAGAAGAATGCTTTGATAAGGAGACAGGACCATTTGGAGCTGCTGCAAGAAGAGCAGGATTTAGAAAGAAGGTTCGAGCTGCTGAACCGAGAGCTCAGAGCCATGATGGCTATTGAAGACTGGCAAAAAACTCAGGCCCAGCAGCACAGAGAACAGCTGCTGCTTCAGGAACTGGTATCACTGGTCAACAAGCGGGACAAGCTGGTCAGAGACATGGATGCCAAAGAGAGAGGGGCTTTGGAGGAGGACGAGAGACTGGAAAGAGGTCTGGAGGCCAGACGGAGGAAATTTAGCAATAAGGAAAAGTGTGTTCttcaataataatagtttaaaaagttAATATGGAACTGTGGCGATTGCAGCAGGACATTAGTGTGCCTTGTTATAACTTCCTCACAACTTCAAGATCTCAGTGGGATATAAAACACCTCCAGAAGTTTTTGCCTAAAGGTTTGCAcaattttgatgttgtttttttctccCCAGGCTGCACTGGTGTAGAGTTTGGTATTACCCAGGcacattctaaaaatgtacctctatatattTTTGAAGACCGTCGAATATATCCTAGGAGCTAcgtttatgttttttgtttttttgttttgcaatttttgttttttgcaaatccAGAAgaagccgctgtgtatgctttttgagatctcaaatttctcttgcgagtgccttTTGTAtctgctgttctctcgtaaatccaccagaggccgctgttgactgactgactgaatgactgactgaccagtcgactgacccaccctcctccttccctaaacccaacccataatgttttataaagcacagattgacccacccacccactttcctaaacccaaccgacaaatttaaaaagcaattcagaaaaagaaaagccctcgcctgatttttttaccacattcttacccttttatgtacttgtttattttgttttttggtttgtctttgtcttacccgctttcggGAACCCCTCTTCACCGAACTTGAACCCTGGGTCAGGGTaatctcctctctgcgtctcaattccactaacgtacatggcgagctacctaaacaaactggtaacagccggaaagccgtccatacggaggtaagtggtcagctggtaagcgtgaaaaggaaaagcgtcataccgccccatagcgttcgtttaaaaaatgcagccatgcgtacttctggctacataattcacgatctccagaaatgtacatggggtacatttcagaatgagcttgtgtTGCAACTAAAgcaatattactttaatattgaACAATAAACACTTTTCACACATCTGAATGGTAAACAATAAACTGAACACAGTAAATTGCAGGAAGAAAACGGGAAAATCCTACACAATGCTGCAGATCACAAGAAATCCTATATTTATTAACAGCATTTTTTTGCTGAAGTGAAGAAAATATTCCTGAGTAAATAATAGATTTCTTGCAAGCTACAGCATTTAGGGTTTTCTCTGCTTTGTTATGCTTTATTgtgaatgtaatattttttcacaGACAGGAATAAGCCGGTTTGACTGTCATTAAGGTGTATGGAAAAGACAAAGAGAATTGCGCCAAAGTTTGCtggttttacattatttattgaaGTGTGTTGTTTGCTGGTATGCCAAAATGTGTCTGTCGGGCTGTTGTCTTGCATTAGTTGCAAAATGTGTTTTGAGACGGTATGTGTCTCCAAATGAATGTATTCATGAAATGATTTTGCATTGCAGTGCCTTTAGAGGTTTATTACCTTTCCAAAAGGGGCTttttatatacagtcaagccattctgtatttttctgttttaaatctCGACAAGTTCATTCAAAATAAGAATGAAACAAATATTTATAGATTGTTTTATAGATGTACAACAAAAGTATTTTGTCAGACTGTACACTTTTTTTGATATGTTAATGTGTTATTCATTCCTATTTTAAGAGTTAGGGTGTTTTATTCAATAAAGTTTGATGCTGTTTGAATT

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0031941 filamentous actin cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-238 Predicted to be involved in actin cytoskeleton organization. Predicted to be part of filamentous actin. Predicted to be active in microtubule organizing center. Orthologous to human EHBP1L1 (EH domain binding protein 1 like 1).

Ensembl:

ensembl_id ENSDART00000089205

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005716 lncRNA upstream 84966 26786369 ~ 26786785 (+) True XLOC_002175
TCONS_00004188 lncRNA upstream 100074 26766385 ~ 26771677 (+) True XLOC_002174
TCONS_00005715 lncRNA upstream 242469 26628793 ~ 26629282 (+) True XLOC_002167
TCONS_00004176 lncRNA upstream 254146 26612321 ~ 26617605 (+) False XLOC_002166
TCONS_00005714 lncRNA upstream 307230 26564221 ~ 26564521 (+) True XLOC_002164
TCONS_00004206 lncRNA downstream 48104 26973601 ~ 26976954 (+) True XLOC_002186
TCONS_00005902 lncRNA downstream 136264 27061761 ~ 27064405 (+) False XLOC_002190
TCONS_00005903 lncRNA downstream 136445 27061942 ~ 27064405 (+) False XLOC_002190
TCONS_00005904 lncRNA downstream 243629 27169126 ~ 27198982 (+) True XLOC_002193
TCONS_00005905 lncRNA downstream 1278267 28203764 ~ 28246420 (+) False XLOC_002195
TCONS_00004192 mRNA upstream 34578 26834985 ~ 26837173 (+) True XLOC_002179
TCONS_00004191 mRNA upstream 39707 26827113 ~ 26832044 (+) True XLOC_002178
TCONS_00004190 mRNA upstream 49561 26813710 ~ 26822190 (+) True XLOC_002177
TCONS_00004189 mRNA upstream 60354 26800213 ~ 26811397 (+) True XLOC_002176
TCONS_00004187 mRNA upstream 114265 26747755 ~ 26757486 (+) True XLOC_002173
TCONS_00004197 mRNA downstream 1157 26926654 ~ 26933031 (+) False XLOC_002182
TCONS_00004198 mRNA downstream 1188 26926685 ~ 26933708 (+) True XLOC_002182
TCONS_00004199 mRNA downstream 9658 26935155 ~ 26941550 (+) True XLOC_002183
TCONS_00004200 mRNA downstream 18921 26944418 ~ 26960665 (+) False XLOC_002184
TCONS_00004201 mRNA downstream 19481 26944978 ~ 26961209 (+) True XLOC_002184
TCONS_00004170 other upstream 565408 26306229 ~ 26306343 (+) True XLOC_002162
TCONS_00004166 other upstream 907352 25964284 ~ 25964399 (+) True XLOC_002158
TCONS_00004165 other upstream 911003 25948242 ~ 25960748 (+) True XLOC_002157
TCONS_00004149 other upstream 2198822 24668774 ~ 24672929 (+) False XLOC_002143
TCONS_00004147 other upstream 2207302 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004210 other downstream 137677 27063174 ~ 27063257 (+) False XLOC_002190
TCONS_00004211 other downstream 137857 27063354 ~ 27063438 (+) True XLOC_002190
TCONS_00004216 other downstream 1234800 28160297 ~ 28162247 (+) True XLOC_002194
TCONS_00004217 other downstream 1327181 28252678 ~ 28252795 (+) True XLOC_002196
TCONS_00004234 other downstream 2341294 29266791 ~ 29268413 (+) True XLOC_002204

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_12496984_12537562.mRNA True 11665 mRNA 0.45 45 CI01000304 12496879 ~ 12539153 (+)