RNA id: XM_036955339.1


Basic Information

Item Value
RNA id XM_036955339.1
length 5414
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC110504279
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62500076 ~ 62602774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGATTCATCTTTAGATGCACTATTTCGTTGTTCTGGCTTCCAGAGCCATTTCGCCCTTTAAACAGAACACGGAAGGAAGGTCCTTCGACAAAAAAAAACGTTAAGACTCATTTAGTCCGATATTGGTCGAGGTTACCCGAAGCAAACTTGTAACGATGTAATGGAGAAACGAAAAAACAAACATCTGTGCGACAGTCTCAATTATGTTAATATATGTAGAGACAATCTTTAACGATACATTTTTTTACACATTTCAATGGGCTGATGTTAATGCAGAAAATATGTGCACTAATATTAGGAGcggaaaaaaaacaaacacattttttgaGAAGATGCACCTGCAGACCGCGCCTAGTCGGTTGCTTGGAGACGAGTGAAGATGTAACATATGTGTGTAGTAACTCCACTTGTTTCAGAGGTCTTCGAGCTAGATAACAATACATCTATTCATATACATTGTAAATTATACATTTTCTTGACATATTTTTGCATGTAGGTTGGGATGAATCGCACGGTTCAAGGACATTGCTTGCATGCCACTTCGCCAGCCCGTGCCCCTGATCTGAATGAAGGCTGCGTCCATGGCCAGCAATGACGTTATTTCCTGGGGGGTGGCAGTGGGAGCAAAGTACTGCAGTTCTAGGGAACAGTGTATGCAAGTCTGACATGTGAGCATTTGGTCCGGAACAACCTGCTGCACTAATTCCACATTGTACGAATTTAATCGCATGaagaactgttttttttttttgtgtgtgtttgtgtgtgtgtgtttttattttttatttttaccatcGCACTTCAAGACAAATTCCTTCTTTTTTTTATTCAGATAGGTATATATTTTTGTACCGCCTCGGTTCGTGTGGACGTTTAGGCAGATTCATAACGAAGCATGGCGGAGAGAAGTGGCCGGTTGAGCTTCGGTGGCGGGGCGCTCAACAGACCGGTGCCAATGAACCTGTTCGCCACATGGGAAATAGATGGATCGTCCCCGAGTTGTATCCCGAGGTTGTGCAGTCTGACTCTGAAGAGGTTGGTGGTCCTGAGGGAGCTGGATAAGGAGCTCATCTCTGTGGTCATCGCTGTCAAAATCCAGGGTTCCAAGAGGATCCTGAGGTCCCATGAGATAGTGCTGCCCCCTAGTGGCTCAGTGGAGACTGACTTGGCTCTCACCTTCTCACTGCAGTACCCTCACTTCCTGAAGAGAGAGGGTAACAAGCTCCAGATCCTGCTGCAGAGGAGGAAGAGATACAAGAACCGGACTATCCTGGGATACAAGACCCTGGCTGTAGGAACCATCGATATGGCTGAGgtgATGCAGCACCCTACGGAGGGGGGCCAGGTTCTGTCTCTGTGCAGTAACCAGAAGGAGATGCTGGGTAAAGTagctgagatctggatcttctcacTGTCCAGTCAGCCGATAGACCACGAAGAGGCCGCTCTGCAGGAGGGAACCAAGATCAAATGCTCAGataCCTATTCAGAGGAGGAGTATGAGAGTTTCTCTTCAGAGCAAGAGGCCAGCGATGATGCTGTTCAGGGTCAGGACCTTGAGGATGACGAGTATGATGTGAGGAAACCAAAGAAGCACAGGAGGTCTATCGTGAGGACTGCCTCAATTACCAGGCAGCAGAACTTTAAACAGAGACTGGTGGCCCTGATCAAGAGGTTCCGAGTCTCAGACGAGGTGTTGGACTCGGAGCAGGACCCGGCAGAACCCCCTCCAGAGGTAGAGGAGGATCTGGACCTCGAGAGTCTGGACCTAGAGAACCCCAGTGACAGTGGACCGGAACTAGACGATGACGACAGTGTCCTCAGCACCCCGAAACCTAAACTCAAGCCGTATTTTGagggtctctccctctccagttcTCAGACAGATATTGGCAGCGTCCACAGCAGTCGGAGTCACCGAGAGCCACCAAGTCCGATGGACCCAGACAAGACTAAGAGCAGTGGAGACAAATTCCAGGCGGACAATGTCTCAGATAACGCTTCTCTTCAGGAGGAGCAACCAGAGGCAGTGACCCCCACTACAGAGCTGGAGATGGACAACATGGACACCTTCCTGGAGAAACTGCCCCCTACTGGCAAGATGAAGAAGACcgagtccctcatcatcccttcCAACAGGCAGGAAGCTAAAttggcagggaggagagggagaagtacTTCCCTAAAGGAGCGCCAGCCCAACAGACCACAGAACGAGAGAGCCAACAGCCTGGATAACGAACGCTTGCTCGACACACGCTGCCATCTACAGATCCCCAGGAAGACTGTGTATGACCAGCTGAACCACATCCTGGTGTCTGACCACCATCTACCTGACAGCATCATCCTCATCAACACATCTGATTGGCAGGGCCAGtaTCTGTCAAGTGTTCTCCAGAACCAGCACCTCCCAGTGGTGTGTACCTGTACTACAGCAGACATCCAGGCCGCCTTCAACACCATCGTCTCACGCATACAGAGATTCTGTAACTGTAACAGCCAGACACCCATCCCCATAAAGATAGCTGTGGCTGGGGCCCAGCACTACCTCGGTGCAGTCCTCAGGCTGTTTGTAGACCACCTCTCTTACAAGACCCCTGATTGGCTGGGCTACATGAGGTTCCTCATCATACCACTAGGGTCTCACCCAGTCTCCAAGTACCTGGGTACCATCGACTATCGATACAACAGTTTATTCCAGGACACTGCGTGGAGTGACCTGTTTTACAAGCCAGAAGCACCCGTCATGATGCAGGAGAGCCCAGACGTGGTTTCCAGGGTAACCCAGTATATGGTCGGGGCCAACGGAGCTCACCAACTCCCCATCGCTGAGGCCATGCTCACATACAAACAGAAGAGCCCCGATGAGGACTCGTGTCAGAAGTTCATTCCCTTTATCGGAATGGTGAAAGTTGGCATCGTGGAGCCGTCATCTGCAACATCAGGTGACTCTGACGATGCATCCCCCATGGGGATGGTtttccactcctccacccctcctcagGTGTCCCCTGCCCTGAAGGAAGCCtcacccacccctccctcctccccctccgtCAACACAAGCTTCAGTTCCTACGGTTCTCCCCAGGGGGAGCTGATGGGACTACAGGTGGACTACTGGGTGGCTCCCTCCCCGGCTGACAGGAAAAGAGACGTGGAGAAAAGGGACTCGTCCTCCTCTAAGAACACTCTGAAGTGTACGTTCCGCTCGCTGCAGGTCAGCAGGCTCCCCCAGGCCGGGGCTCAGCCACAGCCCGCCATGTCCATGACTGTCGTCATGAAGGAGAAGAACAAGAAAGTCATGTTCCTGCCAAAGAAGACTAAAGACAAGGATGTGGAGTCTAAGAGCCAGGTGATCGATGGCATCAGTCGACTAATCTGCACTGCGAAGCACCAGCAGACCATGCTGAGGGTGCTGATTGACGGCGTGGAGTGGAATGATGTCAAGTTTTTCCAGTTGGCGGCACAGTGGTCGTCACACGTCAAACATTTCCCCATCGGGATCTTTGGACACACTAAAGGGCCTTACTAACAGGCCCCGCAGGCAGCAACTAGAACTAGTATCCATAGAGACCGTTGCCACAGTAGCGACCGTTGCCACAGTCCACAGTAGCGACCGTTGCCACAGTAGCGACCGTTGCCACAGTAGCGACCGTTACCATAGACACTCATCTGGAACTGAGGACGACGCCCCCGCTCTCATGTGCCAATAGCCTTTAACGTCCCAGCTCCGGGCTTTGCACTGCCCCGCCCCCCCAGTTTGCACTGCCCCGCCCCCCCAGTCTGCACTGCCCCGCCCCCCAGTCTGCACTGCCCCCCCACCCGCAcatcatagcctggtcccaggtctgtttgtgttgtcttgtcaaCGATTTGCTTGACATTGACcttaggagttggcaagacagcacaaacggATGTGGGACCCAATGTCTTAATTTAAGCTCCAGCTTTCCCTTGTGTTTTATGTTAATacgtttctgtgtgtttgttttcttcTATATGTATATTATAAACCTTCCCGAGGCAAGGCTGTCAAGGGGACATTTTGTTTTCTCAccaagctttaaaaaaaaaaaatttaaaaacctgctgatgttttttttaaaaaaacgAGCAGAAACCTAACGAAATAATAATTTGATAAATTAACTCATTAACTCCTAAAAAGCGAGTGCTCAACTTTtcggccccctccctctctttttttttaaTGTGGCGAAGATGGATCGTTTCAAACACTTTGCCAGGCACAAATTAGCTAGATAACTCTTTGTTAAGATGACTTCGTAACCAAAGGCCCTGAAATGGCTGGTGgagaagggaggatggagggtggtAGAGGATGACAACACAGAAGAGATTACTTATCTTGTAAGGCTGGAAGAAGGATGGATCTGGATCCTCAAATGAAATGACTTTATTAAGCCTAGACAGCCCTAGTCCTGGGGTGTCTTCACTAGGAACTAAATAGAAACAAACGGAACGGAGAGGGACCTACCTTAATTTGTCCAACAGGAACTTTTGTtttcataacaaaacattctccATTGTGAAACttttttgctacagtgtgcactaatgaatactcCCCTAATGACAGTGGCTCCTGTTATAGCCCTCTGCACTCATCAGATGTAGCCGGCTACTGAGACTCTCTGCACTCATCGGATGTAGCCGGCTACTGAGACCCTCTGCACTCATCAGATGTAGTCGGCTACTGAGACTCTCTGCACTCATCAGATGTAGTCGGCTACTGAGACCCTCTGCACTCATCAGATGTAGCCGGCTACTGAGACCCTCTGCACTCATCAGATGTAGCCGGCTACTGAGACCCTCTGCACTCATTGGATGTAGCCGGCTACTGAGACTCTCTGCACTCATCGGATGTAGCCGGCTACTGAGACCCTCTGCACTCATCAGATGTAGTCGGCTACTGAGACCCTCTGCACTCATCGGATGTAGCCGGCTACTGAGACCCTCTGCACTCATCGGATGTAGCCGGCCACAGAGACTCTCTGCACTCATCGGATGAAGACTGAAATGTGCAATAGAATTAGCCTGAAATCCAGACCTGTTTTGTGTTAATATTCCACACCTTGTACTCCATGTCATATGTTTGGCAATCACaaggagtggcaaggagtggaatgatggTACAAACAGACAGGTACCAGGCTACGATATACTATATACGTCCTGTACatccaatcaattaaatgtaaATGCAACTCATCATTGAGATGGCACTGACCCGGCAATGACAAATGGTTGATGCATATCTTGcactctatcctgtcctctctctctctatcctgtcctctctctctgtttcctgtcccctgtcccctttctctctctatcctgtcccctctctctctatcctgtcccctctctctctatcctgtcc

Function

GO: NA

KEGG:

id description
K23294 PACS2; phosphofurin acidic cluster sorting protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883952 lncRNA upstream 51038 62448808 ~ 62449040 (+) True G1646607
TU1883775 lncRNA upstream 54043 62414368 ~ 62446035 (+) True lgals3a
TU1883917 lncRNA upstream 102089 62342250 ~ 62397989 (+) True G1646573
TU1883906 lncRNA upstream 144527 62350547 ~ 62355551 (+) True G1646564
TU1883912 lncRNA upstream 164070 62335733 ~ 62336008 (+) True G1646569
TU1883763 lncRNA downstream 168 62602942 ~ 62603952 (+) True G1646446
TU1884031 lncRNA downstream 10739 62613513 ~ 62614196 (+) True G1646666
TU1883980 lncRNA downstream 33513 62636287 ~ 62638114 (+) False LOC110504278
TU1883983 lncRNA downstream 33513 62636287 ~ 62638114 (+) False LOC110504278
TU1883984 lncRNA downstream 33513 62636287 ~ 62638114 (+) False LOC110504278
XM_021585447.2 mRNA upstream 6440 62486921 ~ 62493638 (+) False srsf5a
XM_036955334.1 mRNA upstream 14631 62466254 ~ 62485447 (+) True LOC110504280
XM_036955332.1 mRNA upstream 39771 62455117 ~ 62460307 (+) True LOC118941522
XM_036955331.1 mRNA upstream 54134 62443143 ~ 62445944 (+) False lgals3a
XM_036955340.1 mRNA downstream 2130 62604904 ~ 62638126 (+) False LOC110504278
XM_036955342.1 mRNA downstream 52959 62655733 ~ 62771956 (+) False LOC110512290
XM_036955344.1 mRNA downstream 52959 62655733 ~ 62771956 (+) False LOC110512290
XM_036955343.1 mRNA downstream 52960 62655734 ~ 62771956 (+) False LOC110512290
XM_036955345.1 mRNA downstream 93610 62696384 ~ 62771956 (+) False LOC110512290
TU1883744 other upstream 6359 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 354788 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 938994 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 1154924 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 1208237 61279819 ~ 61291841 (+) False LOC110498404
TU1884898 other downstream 414181 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 472375 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 599982 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 788851 63391625 ~ 63391832 (+) False LOC110498409
TU1886125 other downstream 1525434 64128208 ~ 64129068 (+) True G1648296

Expression Profile