RNA id: TCONS_00049686


Basic Information

Item Value
RNA id TCONS_00049686
length 1533
RNA type mRNA
GC content 0.54
exon number 7
gene id XLOC_025152
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14317802 ~ 14373165 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttttatgtgTGAAGAATAAAGTGGGAGCATGAGAGGAGGATCAGAGCAGAAAGGAGGAGGATCTACAATGGCAGCAGAAGAGAAACCTGCTGTGAAGAGCAGCAGCTCCATTATACCATGTTTCCTATTTGTGGAGcTGGTGATCATGGCAGGCACCGTGCTCATGGCGTACTACTTTGAATACACGGACACCTTCCCCGTGCACATCCAGGGCTTCTTCTGCTTCGACAAGGCGTTCTCCAAACCGTACCCGGGACCGGATGAGACCAGCAACGTGCCGCCGGTGCTCGTGTACTCGCTGATAGCTGCTATTCCCACTATAACCATTTTGGCTGGTGAGGTGATGGTGTTTTTCATGAGGGCGGAGGGCACGCAGGAGAAGACAATCGTCACTGCAGACTGCTGTTACTTCAACCCTCTGCTGAGGCGCATCATACGCTTCCTCGGTGTCTACACCTTTGGCGTCTTCACCACCACTATCTTTGCGAACGCCGGACAGGTAGTGACAGGAAACCAGACGCCTCACTTCCTGTCGGCATGCAGACCAAACTACACAGCACTGGGCTGCCATTCAAACCTCCAGTACATCACCGAACGCAAAGCCTGCACCGGAAACCCGCTCATAGTGGCGTCTGCCAGAAAATCCTTCCCCTCCAAGGACGCAGCGCTCAGTGTTTACTCTGCAGTGTACACTGTGATGTATGTGACGCTGGTGTTCAGGACTAAAGGGACGCGTCTGACCAAACCCACACTCAGTCTGACTCTGCTGTGTCTGGCCATGTTGGTGGGTGTTGTTAGAGTGGCTGAATACCGAAACCACTGGTCGGACGTCCTCGCCGGATTCTTCACCGGTGGAGCCATCGCTGTGTTTCTGGTGACATGCGTGATCAACAACTTCCAGCAGACAAAGCCTCCTCCCCCGGCGGTGCGAGTCCAGCGGCCTGAGTCTGTTCTGGGCATGCCCATGGTGGCGCTGCCCTGCGTTGAGAGTCCACTTGAAAAACTCCAAGGGGATCTCCATTCACTGAGATCACATGACCATCAGCCTCATCGGTTCCCCGTCCCCCCCGATGTCCTCATACCGTCTCGCTCCATTTCCAGCGAAGTCTAGACCAGCCGTCCCAGCACGCGCACCACTGCGCCGCCCACTCCGCGGGACGCTCCAACAACCTGCAGCGCTCCTACTCCACGCAGGTCTAGATTTCCACACCTCCAACCCCTCATCCTCCATACTCCTCCATGCTGCCGATAGGGCCTCCACAAACCGCTCAAACAAGCACTTTTAGAGAGCCTGCTCCAAGAACGCAAGAGACCATGGGCAGGCGTCATGGTCTTGCCGGAGagtttgtttggactgtgggtggaGGATGCGCACCTGCTCAGACCTCTCGAAACCAACCCGACCTACTTCCTGGGGAACCGATGAAGAAATCTCGATCAGCTTTTGGCTGACTCGCAAAAACTTGATTTTTACTGAAAGTGTCAAATGTTTTCGTTCTTATGTACTGTAAATACATTGTGTTTCTTGTTC

Function

GO:

id name namespace
GO:0046839 phospholipid dephosphorylation biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0042577 lipid phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1171 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Orthologous to human PLPPR2 (phospholipid phosphatase related 2).

Ensembl:

ensembl_id ENSDART00000162023

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052622 lncRNA upstream 29961 14277650 ~ 14287841 (+) True XLOC_025151
TCONS_00052331 lncRNA upstream 63037 14251244 ~ 14254765 (+) True XLOC_025149
TCONS_00052330 lncRNA upstream 69264 14244198 ~ 14248538 (+) False XLOC_025148
TCONS_00049683 lncRNA upstream 69652 14242119 ~ 14248150 (+) False XLOC_025148
TCONS_00052329 lncRNA upstream 115283 14201043 ~ 14202519 (+) True XLOC_025147
TCONS_00052623 lncRNA downstream 856788 15229952 ~ 15231838 (+) True XLOC_025164
TCONS_00052624 lncRNA downstream 898782 15271946 ~ 15272293 (+) False XLOC_025165
TCONS_00049715 lncRNA downstream 1132020 15505184 ~ 15506157 (+) False XLOC_025169
TCONS_00049716 lncRNA downstream 1132113 15505277 ~ 15506157 (+) True XLOC_025169
TCONS_00052332 lncRNA downstream 1144388 15517552 ~ 15517899 (+) True XLOC_025170
TCONS_00049685 mRNA upstream 57005 14259115 ~ 14260797 (+) True XLOC_025150
TCONS_00049682 mRNA upstream 128780 14157090 ~ 14189022 (+) True XLOC_025146
TCONS_00049681 mRNA upstream 381965 13929860 ~ 13935837 (+) True XLOC_025144
TCONS_00049680 mRNA upstream 416728 13879446 ~ 13901074 (+) True XLOC_025143
TCONS_00049679 mRNA upstream 440552 13862753 ~ 13877250 (+) False XLOC_025143
TCONS_00049688 mRNA downstream 14846 14388010 ~ 14452323 (+) False XLOC_025153
TCONS_00049689 mRNA downstream 14846 14388010 ~ 14452325 (+) True XLOC_025153
TCONS_00049691 mRNA downstream 90777 14463941 ~ 14486959 (+) True XLOC_025155
TCONS_00049692 mRNA downstream 125911 14499075 ~ 14508761 (+) False XLOC_025156
TCONS_00049693 mRNA downstream 125929 14499093 ~ 14503021 (+) False XLOC_025156
TCONS_00049684 other upstream 73018 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049675 other upstream 460086 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049661 other upstream 911264 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049660 other upstream 911479 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049628 other upstream 2370845 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049690 other downstream 26061 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049704 other downstream 301605 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049719 other downstream 1318139 15691303 ~ 15719823 (+) True XLOC_025174
TCONS_00049721 other downstream 1382559 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049736 other downstream 1999848 16373012 ~ 16373127 (+) True XLOC_025188

Expression Profile

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