RNA id: TCONS_00049697


Basic Information

Item Value
RNA id TCONS_00049697
length 1643
RNA type mRNA
GC content 0.49
exon number 8
gene id XLOC_025158
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14543953 ~ 14561096 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCACCGGTGGAAATGAGAATACAGCTTTCGGAAGAGTTATATGGATTATTAATGAGTTTGTAAAGCTAAATGGATGACAAAAATGAGGAGCGATAGATTGAAAATTGTGTTCATGTTGTGTCTGGCATTTGTCACTTCAGgaggaaaatattttgaaagtaAAGTGGCCCAGTTAATCCGAGATGAAACCGAGGATATTAAATGTTTTGTGGAGGGGAAAAAGGACTTCACTTGCTTCTGGGAAAAGGAGGACGGGACGAATTATTCACAAGATAACTATACcttcacatatacatacatGAATGAGAACAAGATGGATTGTGCGGTTTCATCTTTGTTTTTACTGAGCAGCAACAGAAGCGTCTTCTTCTGCAAACTGCCCAAAGCCCTGTTCTTCACCTCTCTGGACGTGCAGGTTCTCCGTGATGGTCAGATGCTGTATAATCGTAGCCTCAATGTTGAGAACATCTTGTTGACGGATCCTCCCAGAAACGTCACAGTCTGGAGCTCGGGGAAGGAAGGGCAGCTGAACGTGAGCTGGCTGCCTCCTGCAGTCAAATACATTGATGACAGTTTGATTTATGAGGTCAGATACGCTGTGGAGGACAGTCACATGGGCAAGGTGGAGGAGACCAAAGCCAGCACCATGCTGGTTTTGCGTGGTTTACAGCCCGACACCAGATACAAGGTGTGGGTCCGTGTCAAACCGGACGGCGTTTCTTATAAAGGCTACTGGAGTTCTTGGACCAGTCCTGTGATTGCAGTCACACCACCAGGCAGCATGGATCCGCTGATTGTGCTGCTGGTGGTTTTCATCATACTGATCCTCTGTCTCCTCTCTATGACTGTGATTCTGTCTCACCACAAGTTTCTTCTGAAGAAACTGTGGCCTGACATACCAACACCAGAGCACAAGTTTCCGGGTCTTTTTACTGTCTATAAAGGGGATTTTAAGGAGTGGATGAGCCAGAACAGCGGCAGCATGTGGACGAGATCAGTCCAAATGTACACCGAAGAGCTTCCTTCCCCGCTGGAGGTGTTATCCGAGGTCAGTCTGTCCCCATTAGACGAGAGGAAGCTTGTGCGGGACGAGGACCATTGTTCAGACTCGGGGCTGACAGAGCCTCCTCATTGGCTCATGGAGCAGCTGAGGGCGCTTCAAGAAAACACTGAGTCCCTCTCTCGGTCCACACTACTGCAGTCCCATGACACCTACATCACTTTAAACCACAGCTCTGGTGGTCAGCGGGAGGACGATGTTTTTGAGGAAACGCTCCCGCTCCAAACACTTTTCACCAGCGCAGGAACGTCCTCTCTAAACGCCTCGCACTCAGATTTGGGCTCGCTCCGGCAGAGCTCAGCGTCAGGCCGGCTGTCCTCGCAGTCTAGCTTTGAGGATCCCAACCACCCATGGCCCCCGAAAGGGCCGGGATACGCTTATATGGCGGTGGCGGATTCCGGGGTGTCCATGGATTACAGTCCGATGAGCTCCAGCCGGATCATCGAGATCGGGAAACGCAGCTTTTACGCCAACGAATACAAAAACGAGATCTTTGGATACAAGTGGCCGTTCTCTGCTCAACAAGTCCAGTCTGGATACTGACACGTTGTTCAAAACATGAGGTTTAAAGGAATGGTTCAc

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0048793 pronephros development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04640 Hematopoietic cell lineage
ko05200 Pathways in cancer
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-071116-1 Predicted to enable transmembrane signaling receptor activity. Acts upstream of or within hemopoiesis and pronephros development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; hematopoietic cell; hematopoietic system; kidney; and lateral plate mesoderm. Human ortholog(s) of this gene implicated in anemia; familial erythrocytosis 1; high grade glioma; polycythemia; and systemic lupus erythematosus. Orthologous to human EPOR (erythropoietin receptor).

Ensembl:

ensembl_id ENSDART00000161710

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052622 lncRNA upstream 256112 14277650 ~ 14287841 (+) True XLOC_025151
TCONS_00052331 lncRNA upstream 289188 14251244 ~ 14254765 (+) True XLOC_025149
TCONS_00052330 lncRNA upstream 295415 14244198 ~ 14248538 (+) False XLOC_025148
TCONS_00049683 lncRNA upstream 295803 14242119 ~ 14248150 (+) False XLOC_025148
TCONS_00052329 lncRNA upstream 341434 14201043 ~ 14202519 (+) True XLOC_025147
TCONS_00052623 lncRNA downstream 668868 15229952 ~ 15231838 (+) True XLOC_025164
TCONS_00052624 lncRNA downstream 710862 15271946 ~ 15272293 (+) False XLOC_025165
TCONS_00049715 lncRNA downstream 944100 15505184 ~ 15506157 (+) False XLOC_025169
TCONS_00049716 lncRNA downstream 944193 15505277 ~ 15506157 (+) True XLOC_025169
TCONS_00052332 lncRNA downstream 956468 15517552 ~ 15517899 (+) True XLOC_025170
TCONS_00049696 mRNA upstream 6377 14512670 ~ 14537576 (+) True XLOC_025157
TCONS_00049692 mRNA upstream 35192 14499075 ~ 14508761 (+) False XLOC_025156
TCONS_00049694 mRNA upstream 35697 14499115 ~ 14508256 (+) False XLOC_025156
TCONS_00049695 mRNA upstream 36580 14499118 ~ 14507373 (+) True XLOC_025156
TCONS_00049693 mRNA upstream 40932 14499093 ~ 14503021 (+) False XLOC_025156
TCONS_00049699 mRNA downstream 10729 14571813 ~ 14606118 (+) False XLOC_025159
TCONS_00049700 mRNA downstream 10755 14571839 ~ 14581210 (+) False XLOC_025159
TCONS_00049701 mRNA downstream 20559 14581643 ~ 14605846 (+) True XLOC_025159
TCONS_00049702 mRNA downstream 50215 14611299 ~ 14638399 (+) True XLOC_025160
TCONS_00049703 mRNA downstream 80878 14641962 ~ 14688110 (+) False XLOC_025161
TCONS_00049690 other upstream 144301 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049684 other upstream 299169 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049675 other upstream 686237 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049661 other upstream 1137415 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049660 other upstream 1137630 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049704 other downstream 113685 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049719 other downstream 1130219 15691303 ~ 15719823 (+) True XLOC_025174
TCONS_00049721 other downstream 1194639 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049736 other downstream 1811928 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049741 other downstream 2008181 16569265 ~ 16588629 (+) True XLOC_025190

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000333_00319502_00325574.mRNA True 1663 mRNA 0.51 9 CI01000333 319502 ~ 325662 (+)