Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049701 |
| length | 843 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 7 |
| gene id | XLOC_025159 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 14571813 ~ 14606118 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003712 | transcription coregulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-071116-3 | Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF653 (zinc finger protein 653). |
| ensembl_id | ENSDART00000182840 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052622 | lncRNA | upstream | 293802 | 14277650 ~ 14287841 (+) | True | XLOC_025151 |
| TCONS_00052331 | lncRNA | upstream | 326878 | 14251244 ~ 14254765 (+) | True | XLOC_025149 |
| TCONS_00052330 | lncRNA | upstream | 333105 | 14244198 ~ 14248538 (+) | False | XLOC_025148 |
| TCONS_00049683 | lncRNA | upstream | 333493 | 14242119 ~ 14248150 (+) | False | XLOC_025148 |
| TCONS_00052329 | lncRNA | upstream | 379124 | 14201043 ~ 14202519 (+) | True | XLOC_025147 |
| TCONS_00052623 | lncRNA | downstream | 624106 | 15229952 ~ 15231838 (+) | True | XLOC_025164 |
| TCONS_00052624 | lncRNA | downstream | 666100 | 15271946 ~ 15272293 (+) | False | XLOC_025165 |
| TCONS_00049715 | lncRNA | downstream | 899338 | 15505184 ~ 15506157 (+) | False | XLOC_025169 |
| TCONS_00049716 | lncRNA | downstream | 899431 | 15505277 ~ 15506157 (+) | True | XLOC_025169 |
| TCONS_00052332 | lncRNA | downstream | 911706 | 15517552 ~ 15517899 (+) | True | XLOC_025170 |
| TCONS_00049700 | mRNA | upstream | 433 | 14571839 ~ 14581210 (+) | False | XLOC_025159 |
| TCONS_00049698 | mRNA | upstream | 20547 | 14558188 ~ 14561096 (+) | True | XLOC_025158 |
| TCONS_00049697 | mRNA | upstream | 20559 | 14543953 ~ 14561084 (+) | False | XLOC_025158 |
| TCONS_00049696 | mRNA | upstream | 44067 | 14512670 ~ 14537576 (+) | True | XLOC_025157 |
| TCONS_00049694 | mRNA | upstream | 73387 | 14499115 ~ 14508256 (+) | False | XLOC_025156 |
| TCONS_00049702 | mRNA | downstream | 5453 | 14611299 ~ 14638399 (+) | True | XLOC_025160 |
| TCONS_00049703 | mRNA | downstream | 36116 | 14641962 ~ 14688110 (+) | False | XLOC_025161 |
| TCONS_00049705 | mRNA | downstream | 162518 | 14768364 ~ 15058463 (+) | False | XLOC_025162 |
| TCONS_00049706 | mRNA | downstream | 162518 | 14768364 ~ 15058464 (+) | True | XLOC_025162 |
| TCONS_00049707 | mRNA | downstream | 570891 | 15176737 ~ 15186292 (+) | True | XLOC_025163 |
| TCONS_00049690 | other | upstream | 181991 | 14399225 ~ 14399652 (+) | True | XLOC_025154 |
| TCONS_00049684 | other | upstream | 336859 | 14244666 ~ 14244784 (+) | True | XLOC_025148 |
| TCONS_00049675 | other | upstream | 723927 | 13848226 ~ 13857716 (+) | False | XLOC_025143 |
| TCONS_00049661 | other | upstream | 1175105 | 13406451 ~ 13406538 (+) | False | XLOC_025131 |
| TCONS_00049660 | other | upstream | 1175320 | 13406226 ~ 13406323 (+) | True | XLOC_025130 |
| TCONS_00049704 | other | downstream | 68923 | 14674769 ~ 14684603 (+) | True | XLOC_025161 |
| TCONS_00049719 | other | downstream | 1085457 | 15691303 ~ 15719823 (+) | True | XLOC_025174 |
| TCONS_00049721 | other | downstream | 1149877 | 15755723 ~ 15774178 (+) | False | XLOC_025176 |
| TCONS_00049736 | other | downstream | 1767166 | 16373012 ~ 16373127 (+) | True | XLOC_025188 |
| TCONS_00049741 | other | downstream | 1963419 | 16569265 ~ 16588629 (+) | True | XLOC_025190 |
