RNA id: TCONS_00049702


Basic Information

Item Value
RNA id TCONS_00049702
length 1747
RNA type mRNA
GC content 0.38
exon number 8
gene id XLOC_025160
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14611299 ~ 14638399 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGAGGGAGCGTCACGTCACGCCCACCTGTTCGCTGCATCCTCCTCTCTGTAGTAAAACAGCCGTTCACACTTCAGCAGATCATTCAGAGCAAGAGAAAACACGAGCAGGACGAAAACTTGTCTCTCACTTTCTCACTCAGGGATTTAACCGAGTCTATATCAAACATTTGACTAAAGgTTTCATATCCATCCAAGAAAATGGGTTGCTTTGGATTTTTGAAAACCATGATGTTTCTCTTCAATGGCATCATCTTTcTGGCAGGAGGGGTTATTCTGGGTGTGGGCATCTGGGTGAAGGTGGACAACGGCTCCATACTGAATTTTATGCAGAGTTTACCAGGCGCTTCGAGTCAGATGGGACAGGTGCTGAATGTGGGATACCTGCTGATCGCTTTGGGAGCTGTGCTAGTCGTCCTGGGCTTCCTGGGCTGCTGCGGAGCCGTCAAAGAGAGCAGGTGTATGCTGATGCTGTTCTTCATTATTATTCTGATCATCTTCATTGCTGAAGTTGCCGGGGCGATTGTGATTCTGGCGTTTAGGCCGCTGGCAGAAACGCTGATTAAACAGTTGGGAGTTGATGCTGTGAAAAGCCTCCAAAGTGACTTTGGGAAAAACCAAGACGTCACCGGATTGTGGAACACAACAATGACTGGGATGAAATGCTGTGGATTCAACAACTATACGGATTTCACAAACTCTTTTTTCGTGAACAGCACCAAGAATTATCCGGTGCAGTGCTGTAACACATCTCCATGTAATCAGGCGGCTGTTATGAATTCGACTGTCACAGGTTGTTTTCCAGCACTGATAAAGCTGGTGGATAAAAATGCCGTTATCATCATAGCCGTAGCATTGGGCATCGCTGCGCTTGAGCTTGCGGCGATGATCGTGTCCATGGTCCTGTACTGTAAAATAGGTTCAAAGGCTTAACGTGTCACTTTAATGGAAGTATCTGTCCAATGACCCCTCTTGATGATTGAGGATGAGGTGGAATATCGGTTGTAATGATTTCATTCTGGATAAGAATGACtgcttaaaagaatagttcacccaaaaggaCCAtttcctcattatttatttaacattcatgatttttgttcttctgttgaacattaagaaaaatattcagaataattttgggggaaaaataacATTGACATCAATTGttggggcaaaaaaaaaatactatggaagtcaatagttgttttgttttcaacattattcagtattttttctgttttgttcaacagaataaactaaatttgggTAATCTATGCTTTTAATACCTTGAATGAAAACTAAAGTCAGACTGTCAATCTGAAAATCTTGACATTTTACAGTAGTAAAATTAGCTATTTTAATGATTAACATTTCATTGAgactatgattattattattattttgtacttttttactTATATactctgttttattatttaaaagcataaaaccCAAGGCATTGCTTTGTAATTCTAAACACACTACTGTCATTATATGTGCAATGACCAAAATAGGCCAAATGTTTTCTAGCAAAATGTCGCTGTTGTAATTTATTGCAAACCTCTTACAAGCCAAAGGCATTTACACAACGTGACTTCTCATGTAATAAAGCacaatgttttatgtttaaaatgtgatgtataaagtttttaccaaaaaaaactgattattttatgttgctaaaatgttcatataaaatgtttattttgatgatAATTATAGATATAAAGGCAATTTCAACTTTG

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1362 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in peripheral olfactory organ and pronephric duct.

Ensembl:

ensembl_id ENSDART00000140577

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052622 lncRNA upstream 323458 14277650 ~ 14287841 (+) True XLOC_025151
TCONS_00052331 lncRNA upstream 356534 14251244 ~ 14254765 (+) True XLOC_025149
TCONS_00052330 lncRNA upstream 362761 14244198 ~ 14248538 (+) False XLOC_025148
TCONS_00049683 lncRNA upstream 363149 14242119 ~ 14248150 (+) False XLOC_025148
TCONS_00052329 lncRNA upstream 408780 14201043 ~ 14202519 (+) True XLOC_025147
TCONS_00052623 lncRNA downstream 591553 15229952 ~ 15231838 (+) True XLOC_025164
TCONS_00052624 lncRNA downstream 633547 15271946 ~ 15272293 (+) False XLOC_025165
TCONS_00049715 lncRNA downstream 866785 15505184 ~ 15506157 (+) False XLOC_025169
TCONS_00049716 lncRNA downstream 866878 15505277 ~ 15506157 (+) True XLOC_025169
TCONS_00052332 lncRNA downstream 879153 15517552 ~ 15517899 (+) True XLOC_025170
TCONS_00049699 mRNA upstream 5181 14571813 ~ 14606118 (+) False XLOC_025159
TCONS_00049701 mRNA upstream 5453 14581643 ~ 14605846 (+) True XLOC_025159
TCONS_00049700 mRNA upstream 30089 14571839 ~ 14581210 (+) False XLOC_025159
TCONS_00049698 mRNA upstream 50203 14558188 ~ 14561096 (+) True XLOC_025158
TCONS_00049697 mRNA upstream 50215 14543953 ~ 14561084 (+) False XLOC_025158
TCONS_00049703 mRNA downstream 3563 14641962 ~ 14688110 (+) False XLOC_025161
TCONS_00049705 mRNA downstream 129965 14768364 ~ 15058463 (+) False XLOC_025162
TCONS_00049706 mRNA downstream 129965 14768364 ~ 15058464 (+) True XLOC_025162
TCONS_00049707 mRNA downstream 538338 15176737 ~ 15186292 (+) True XLOC_025163
TCONS_00049708 mRNA downstream 633544 15271943 ~ 15284693 (+) False XLOC_025165
TCONS_00049690 other upstream 211647 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049684 other upstream 366515 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049675 other upstream 753583 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049661 other upstream 1204761 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049660 other upstream 1204976 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049704 other downstream 36370 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049719 other downstream 1052904 15691303 ~ 15719823 (+) True XLOC_025174
TCONS_00049721 other downstream 1117324 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049736 other downstream 1734613 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049741 other downstream 1930866 16569265 ~ 16588629 (+) True XLOC_025190

Expression Profile

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