RNA id: TCONS_00051760


Basic Information

Item Value
RNA id TCONS_00051760
length 1622
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_026573
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34174004 ~ 34180464 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTTTGACGCAGCGGAACCCTGCAGGTGACGTGGAATATGGGGACGATAACGCTAAATCCTTGTGTATTAAAACTGCATCAAATGATTTCTATCTGTAATCGAATCGTTTGCAGATATTATTGATCCCACTTAGCCAAAGGGTGTTACAAAACACCAGCCGAGCTGACAAAACGATTGTTTTTGTATTTGCTAGCTCGACACAAGCTGAATAATAGCAGCATCAGGAAACACACTGCTGGATTATCAGCCAGtcgTTTTTCCCTTGAAGagtgaattcgtatgatctccaGTCATGGCTAGTCCAGATGATTTAAAGTTTCAAGAGTTTGAAGAAGCCGAAGATCTCCTGTCCTCAAATCCTGGAGCCTCAACCCTCAGCATCTCCAGCTCAaacccagcagcagcagcagccccATCTGGAGAGGTCAGACTCGACCTGTCCGACGATGAAGAGAATCAGCAGGAGAGTTCAGAGTTGCTTGGAGGGGAAAAGAAAACTGGTGGGTTTTGGACGTTTGAATACTATCAGTCGTTCTTCAACGTAGATACAGTGCagGTGCTGGATAGGATAAAGGGCTCAGTTATGCCTTTGCCAGGAAGGAATTTCATCAAACATCATATACGAAGCAACCCTGATCTATATGGTCCTTTCTGGATCTGTGTGACTCTAGTGTTCTCACTGGCCATCAGCGGGAACCTCTccacatttttgagtgagatgggAAATCCAGAGTATCACTACAGACCTCAATTTCACAGAGTCTCCATTGCAGCAGTCACGGTGTTCCTCTATGCATGGCTGGTGCCACTAGGAGTTTGGGGCTTCCTCACGTGGCGTCAAAGTGTCGAGAGACAGATCAACGGATACACATTTTTAGAGACAGTCTGTGTCTACGGCTACTCTTTGTTCATTTACATTCCTACCTCGGTATTATGGACTATTCCTTTCAACTGGCTCCAGTGGTTGTTGATTGTGGTTGCAATGGTGATCTCTGGTTCGGTGTTGGTGATCACGTTCTGGCCGGCGGTTCGTGATGATACTAAACTAACGGCTTTCGCCACTGTGGCTGTTATCGTGGCACTTCACGCACTGCTGGCTGTCGGCTGTAAGCTCTACTTCTTCCACACGGCAGAGGACACCCGATCTCCACACCCAGGACAGCATATTACTCCAGCCTCAAATCACACAACAGCACTTAAAACTTAATGACGAACCACAGGACAACAGATGAGTCTTTACATTCAAgggacattaaaaaaaagtgttgtagTTGAGCGATGAAGGAGATCTGATCAGTGTGCTAAAGCTAGAAGCACACATCCATTCCCAGCAAACAGCTTGAAAATGTTAACTAACCCAGCAGAAGAAATAACCGCCCTTTAATTTTGTGTTATGGTCGTTTATGTTCATTACCTTTAATTTAATGGGCTAGTTTTGAGTTTGTCATTCAATATTGAGTAATTTAAGAGTGATCATGCTTTACTGTGAATTGATTTGAGGTTTGCCTTACAACCCTTGACTGCTTCCTTTTCTTTCAAGTCTGTTGTTTTCCTTCATTGATGTAATTTAAGAGAGAAAACACCAGTGTGtgtgaaatatttaattttcctttcctgaa

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-124 Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF2 (Yip1 domain family member 2).

Ensembl:

ensembl_id ENSDART00000003133

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053066 lncRNA downstream 32823 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051677 lncRNA downstream 235183 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051675 lncRNA downstream 238566 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00053065 lncRNA downstream 254809 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051667 lncRNA downstream 483250 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051771 lncRNA upstream 289690 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051773 lncRNA upstream 345478 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051776 lncRNA upstream 411453 34591917 ~ 34593056 (-) True XLOC_026576
TCONS_00052476 lncRNA upstream 460584 34641048 ~ 34641973 (-) True XLOC_026580
TCONS_00052477 lncRNA upstream 473123 34653587 ~ 34655108 (-) True XLOC_026581
TCONS_00051757 mRNA downstream 37226 34129505 ~ 34136778 (-) False XLOC_026571
TCONS_00051758 mRNA downstream 37632 34129513 ~ 34136372 (-) False XLOC_026571
TCONS_00051759 mRNA downstream 37636 34131872 ~ 34136368 (-) True XLOC_026571
TCONS_00051756 mRNA downstream 58118 34115438 ~ 34115886 (-) True XLOC_026570
TCONS_00051755 mRNA downstream 60166 34113410 ~ 34113838 (-) True XLOC_026569
TCONS_00051764 mRNA upstream 78291 34258755 ~ 34337969 (-) False XLOC_026574
TCONS_00051765 mRNA upstream 84585 34265049 ~ 34279109 (-) False XLOC_026574
TCONS_00051767 mRNA upstream 84585 34265049 ~ 34296361 (-) False XLOC_026574
TCONS_00051766 mRNA upstream 84585 34265049 ~ 34296361 (-) True XLOC_026574
TCONS_00051768 mRNA upstream 271872 34452336 ~ 34547000 (-) False XLOC_026575
TCONS_00051752 other downstream 70639 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051740 other downstream 87521 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051725 other downstream 109068 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 115287 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051716 other downstream 125351 34048205 ~ 34048653 (-) True XLOC_026539
TCONS_00051772 other upstream 345478 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051781 other upstream 471846 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other upstream 472508 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051787 other upstream 563115 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051789 other upstream 587077 34767541 ~ 34775954 (-) False XLOC_026583

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000069_05025745_05032197.mRNA True 1363 mRNA 0.44 8 CI01000069 5025297 ~ 5032197 (-)