RNA id: TU2377874


Basic Information

Item Value
RNA id TU2377874
length 1822
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G2079608
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37655528 ~ 37684763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGCACCAGTGACATGATTTAATTCCAAAGAAGAACCCGAAGTGAAGAAACAGAAACAGCTACAGGAAGAAAACGGTGAAGTAACCATGACAACTGAATTATAACCATAGACGctgttttctttctcttgttGTAATTTTGTGACAGTTATAATTTAAACGTGATTGACAGCGCATGCCAGAggagaaaaaacacacacaagtaTATAAAAATATGCCATTAGATTCATATCAACAATTGAGGACAGTGGGTGCACTATTTACAGAAAAAAACGGCAATATATACCAATATTTACATTACACACTTCTTTCACACACTGGCAGAAAGGCTACTGAAATGTACTAGGATGGCAGCATAACTTATTATGATGGTTAGAAGTAGTGTGAATGGTAAATTCTGAATGTCTTTGCCACAGTGATATCCTACTCAATTCTGTTACTTGATTAACATGAACGCTAGCATGCTtcatattctacaatgtagtgtCTATAAATGTAGTACGCAGTTACTGTGAAAACAGAGGTGGGTGGAGGGGACCATGGAAATATAATGTGACACACCGTCTACCCAATgtgacaacacaacaacatggacaGAATAAACAACAATTATTCCACACTTGGCTAAAGTACAGAACACTTTGCAAGTACACAGAGACAGGCTGCTCCACTAACAGACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACAGACCTCTACACAGAGACAGGCTGCTCCACTAACAGACCTCTACACAGAGACAGGCTGCTCCACTAACAGACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACAGACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACAGACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACAGACCTCTACACAGAGACAGGCTGCTCCACTAACATGCCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACAGACCTCTACACAGAGACAGGCTGCTCCACTAACATACCTCTACACAGAGACAGGCTGCTCCACTAACATGCCTCTACACAGAGACAGGCTGCTCCACTAACATAcctctacacagagacacagctagcAGCAGTTGAATATCCAAGGACCATCTGATTATATTGacatttttagtaatttagcagacgctcttatccagagcgacttacaggagcaattaagagttgtgccttgctcaagggcacattgtcAGATTTTTTGTCACCTAGTCGCcacggggattcgaaccagcaacctttcggttactcgcCCAaggctcttaaccgctaggctacctgtcgcgtCTGATAATCGGTTAGCCTCTTCATTGGCTCACAGTGGGGGAATTAGCCTAATGCTAATGCATTCGGTTGGAGTGGTTGAAGGTGACCCAGATAGTTTGCAGGGTAGTTCTCATGGCTTGGAGACATTAAACATTATCACCACTTGAGTCTGAACTTGAGGAcactggtttgtgtgtgtgtttgtgtgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377871 lncRNA upstream 1506 37653799 ~ 37654022 (+) True G2079607
TU2377870 lncRNA upstream 16416 37638886 ~ 37639112 (+) True G2079606
TU2377861 lncRNA upstream 24353 37627821 ~ 37631175 (+) False G2079600
TU2377916 lncRNA downstream 32317 37717080 ~ 37717561 (+) True G2079643
TU2377935 lncRNA downstream 52757 37737520 ~ 37777288 (+) True G2079656
TU2377955 lncRNA downstream 62849 37747612 ~ 37821786 (+) False G2079660
TU2377951 lncRNA downstream 131085 37815848 ~ 37819286 (+) False G2079657
TU2377938 lncRNA downstream 131115 37815878 ~ 37819286 (+) False G2079657
XM_036965780.1 mRNA upstream 86655 37536529 ~ 37568873 (+) False LOC110508012
XM_036965781.1 mRNA upstream 86655 37552714 ~ 37568873 (+) True LOC110508012
trnat-agu-152 mRNA upstream 149726 37505729 ~ 37505802 (+) True trnat-agu-152
trnat-agu-151 mRNA upstream 149894 37505561 ~ 37505634 (+) True trnat-agu-151
XM_036965198.1 mRNA upstream 297922 37318716 ~ 37357606 (+) True mre11a
XM_021588455.2 mRNA downstream 367870 38052633 ~ 38060113 (+) True LOC110508017
LOC110507217 mRNA downstream 785155 38469918 ~ 38474599 (+) True LOC110507217
XM_021588440.2 mRNA downstream 934787 38619550 ~ 38628170 (+) True LOC110508002
XR_005040116.1 mRNA downstream 1354810 39039573 ~ 39039625 (+) True LOC118944799
XM_036965220.1 mRNA downstream 1983226 39667989 ~ 39681560 (+) False LOC110508028
TU2377712 other upstream 287392 37366739 ~ 37368136 (+) True G2079468
TU2377335 other upstream 374696 37279105 ~ 37280832 (+) True G2079197
TU2377138 other upstream 378671 37273486 ~ 37276857 (+) True LOC110536894
TU2376553 other upstream 1216174 36438375 ~ 36439354 (+) True LOC110508005
TU2376427 other upstream 1353486 36300938 ~ 36302042 (+) True G2078493
TU2377942 other downstream 131115 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 131115 37815878 ~ 37819286 (+) True G2079657
TU2378436 other downstream 260169 37944932 ~ 37945151 (+) True G2080014
TU2380510 other downstream 2142895 39827658 ~ 39837383 (+) True G2081884
TU2380477 other downstream 2210904 39895667 ~ 39913078 (+) False LOC110507223

Expression Profile